HNRNPR (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000017576 T42166_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.866
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.865
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.810
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000020722 RRM 165 233
ENSTNIP00000020722 RRM 246 313
ENSTNIP00000020722 RRM 341 403

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.856
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.856
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.810
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.726
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.851
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.810
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.839
AAI61702 Xenopus laevis AAI61702 I 0.851
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.810
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.810
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.816
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.800
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.936
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.737
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.824
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.844
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.810
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.805
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.856
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.839
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.810
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.851
AAH70529 Xenopus laevis AAH70529 I 0.810
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.810
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.851
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.810
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.771
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.810
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.792
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.995
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.797
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.797
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.787
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.861
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.839
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.810
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.810
HNRNPR Sorex araneus ENSSARG00000001732 I 0.839
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.851
Syncrip Mus musculus ENSMUSG00000032423 I 0.810
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.810
HNRNPR Homo sapiens ENSG00000125944 I 0.851
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.810
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.819
HNRNPR Equus caballus ENSECAG00000013733 I 0.851
syncrip Danio rerio ENSDARG00000040184 I 0.810
syncripl Danio rerio ENSDARG00000026723 I 0.807
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.810
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.851
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.810
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.751
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.851
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.839
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.844
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.810
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.851
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.810
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.851
SYNCRIP Homo sapiens ENSG00000135316 I 0.810
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.960
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.856
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.810
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.810
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.851
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.804
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.810
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.810
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.805
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.856
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.736
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.810
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.851
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.851
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.810
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.805
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.815
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.802
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.810