HNRNPAB (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000000612 T42192_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPAB
M210_0.6 		Tetraodon nigroviridis WRGWUAG RNAcompete
Ray et al.(2013)
RNCMPT00245 		0.979
HNRNPAB
M301_0.6 		Homo sapiens Sequence logo not available ACAAAGACAAA SELEX
Cook et al.(2011)
39_12419250 		0.814
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000001455 RRM 79 148
ENSTRUP00000001455 RRM 163 232
ENSTRUP00000001456 RRM 66 135
ENSTRUP00000001456 RRM 150 219
ENSTRUP00000001457 RRM 66 135
ENSTRUP00000001457 RRM 150 219

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

81 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPAB Tetraodon nigroviridis ENSTNIG00000010512 D 0.979
HNRNPAB Homo sapiens ENSG00000197451 D 0.814
HNRNPD Oryzias latipes ENSORLG00000001833 I 0.704
HNRNPAB Oryzias latipes ENSORLG00000005327 I 0.871
HNRNPAB Oryzias latipes ENSORLG00000015501 I 0.752
HNRNPAB Procavia capensis ENSPCAG00000006760 I 0.814
HNRPDL Procavia capensis ENSPCAG00000011543 I 0.729
ENSPPYG00000014886 Pongo pygmaeus ENSPPYG00000014886 I 0.729
ENSPPYG00000016107 Pongo pygmaeus ENSPPYG00000016107 I 0.787
HNRPDL Ochotona princeps ENSOPRG00000007178 I 0.729
HNRNPAB Ochotona princeps ENSOPRG00000002546 I 0.807
ENSMODG00000006825 Monodelphis domestica ENSMODG00000006825 I 0.721
ENSMODG00000011916 Monodelphis domestica ENSMODG00000011916 I 0.736
Hnrnpab Mus musculus ENSMUSG00000020358 I 0.807
Hnrpdl Mus musculus ENSMUSG00000029328 I 0.729
HNRPDL Ornithorhynchus anatinus ENSOANG00000004651 I 0.729
HNRNPAB Ornithorhynchus anatinus ENSOANG00000004998 I 0.786
HNRPDL Oryctolagus cuniculus ENSOCUG00000013805 I 0.729
HNRNPAB Oryctolagus cuniculus ENSOCUG00000026424 I 0.782
ABV54637 Xenopus laevis ABV54637 I 0.793
XR_022913.1 Pan troglodytes ENSPTRG00000017601 I 0.814
HNRNPAB Takifugu rubripes ENSTRUG00000008411 I 0.779
HNRPDL Tursiops truncatus ENSTTRG00000001793 I 0.729
hnrnpab Xenopus tropicalis ENSXETG00000003836 I 0.807
hnrnpd Xenopus tropicalis ENSXETG00000012569 I 0.704
Ame_R000242 Ailuropoda melanoleuca Ame_R000242 I 0.729
Ame_R012484 Ailuropoda melanoleuca Ame_R012484 I 0.807
AAH43814 Xenopus laevis AAH43814 I 0.793
AAH74212 Xenopus laevis AAH74212 I 0.793
HNRPDL Pan troglodytes ENSPTRG00000016217 I 0.729
HNRNPAB Pteropus vampyrus ENSPVAG00000016742 I 0.793
D3ZN89_RAT Rattus norvegicus ENSRNOG00000002270 I 0.729
Hnrnpab Rattus norvegicus ENSRNOG00000003645 I 0.807
HNRPDL Spermophilus tridecemlineatus ENSSTOG00000013979 I 0.729
HNRPDL Tupaia belangeri ENSTBEG00000002817 I 0.729
HNRNPAB Taeniopygia guttata ENSTGUG00000001168 I 0.814
HNRPDL Taeniopygia guttata ENSTGUG00000002850 I 0.736
HNRNPAB Tetraodon nigroviridis ENSTNIG00000007596 I 0.779
HNRNPAB Monodelphis domestica ENSMODG00000004217 I 0.800
HNRPDL Macaca mulatta ENSMMUG00000015777 I 0.729
HNRNPAB Macaca mulatta ENSMMUG00000003996 I 0.807
ENSECAG00000018242 Equus caballus ENSECAG00000018242 I 0.800
ENSDORG00000000968 Dipodomys ordii ENSDORG00000000968 I 0.729
HNRNPAB Dasypus novemcinctus ENSDNOG00000013820 I 0.814
ENSDNOG00000003887 Dasypus novemcinctus ENSDNOG00000003887 I 0.729
HNRNPAB Danio rerio ENSDARG00000017568 I 0.779
hnrnpab Danio rerio ENSDARG00000007960 I 0.771
HNRNPAB Cavia porcellus ENSCPOG00000025972 I 0.800
ENSCPOG00000015619 Cavia porcellus ENSCPOG00000015619 I 0.729
ENSCJAG00000032456 Callithrix jacchus ENSCJAG00000032456 I 0.779
LOC100412686 Callithrix jacchus ENSCJAG00000015197 I 0.729
LOC100390818 Callithrix jacchus ENSCJAG00000012235 I 0.729
LOC100404672 Callithrix jacchus ENSCJAG00000005154 I 0.714
ENSCHOG00000000160 Choloepus hoffmanni ENSCHOG00000000160 I 0.729
ENSCAFG00000008940 Canis familiaris ENSCAFG00000008940 I 0.729
HNRNPAB Canis familiaris ENSCAFG00000000241 I 0.800
A4IF81_BOVIN Bos taurus ENSBTAG00000014804 I 0.729
Q3ZC44_BOVIN Bos taurus ENSBTAG00000013627 I 0.800
Q6X9Z3_HORSE Equus caballus ENSECAG00000022692 I 0.729
HNRPDL Erinaceus europaeus ENSEEUG00000004301 I 0.714
HNRPDL Myotis lucifugus ENSMLUG00000014452 I 0.721
HNRPDL Microcebus murinus ENSMICG00000001445 I 0.729
HNRPDL Meleagris gallopavo ENSMGAG00000008033 I 0.736
HNRNPAB Meleagris gallopavo ENSMGAG00000007727 I 0.814
ENSMEUG00000011454 Macropus eugenii ENSMEUG00000011454 I 0.736
HNRNPAB Macropus eugenii ENSMEUG00000007909 I 0.800
ENSLAFG00000008612 Loxodonta africana ENSLAFG00000008612 I 0.729
HNRNPAB Loxodonta africana ENSLAFG00000001189 I 0.814
HNRNPAB Anolis carolinensis ENSACAG00000016946 I 0.821
HNRPDL Homo sapiens ENSG00000152795 I 0.729
HNRNPAB Gasterosteus aculeatus ENSGACG00000018116 I 0.850
HNRNPAB Gasterosteus aculeatus ENSGACG00000020830 I 0.771
Q90626_CHICK Gallus gallus ENSGALG00000014381 I 0.814
HNRDL_CHICK Gallus gallus ENSGALG00000023199 I 0.736
HNRPDL Gorilla gorilla ENSGGOG00000003714 I 0.729
HNRNPAB Gorilla gorilla ENSGGOG00000011692 I 0.814
ENSGGOG00000028444 Gorilla gorilla ENSGGOG00000028444 I 0.729
ENSCHOG00000002938 Choloepus hoffmanni ENSCHOG00000002938 N 0.700
ENSCHOG00000010831 Choloepus hoffmanni ENSCHOG00000010831 N 0.700
HNRPDL Otolemur garnettii ENSOGAG00000002501 N 0.700