HNRNPR (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000008817 T42273_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.866
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.861
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.806
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000022159 RRM 172 210
ENSTRUP00000022160 RRM 165 233
ENSTRUP00000022160 RRM 246 314
ENSTRUP00000022160 RRM 342 404

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.851
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.852
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.806
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.723
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.847
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.806
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.839
AAI61702 Xenopus laevis AAI61702 I 0.847
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.806
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.806
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.812
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.796
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.936
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.737
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.824
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.844
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.806
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.801
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.852
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.839
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.806
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.847
AAH70529 Xenopus laevis AAH70529 I 0.806
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.806
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.847
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.806
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.771
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.806
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.788
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.793
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.995
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.793
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.783
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.857
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.839
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.806
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.806
HNRNPR Sorex araneus ENSSARG00000001732 I 0.839
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.847
Syncrip Mus musculus ENSMUSG00000032423 I 0.806
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.806
HNRNPR Homo sapiens ENSG00000125944 I 0.847
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.806
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.819
HNRNPR Equus caballus ENSECAG00000013733 I 0.847
syncrip Danio rerio ENSDARG00000040184 I 0.806
syncripl Danio rerio ENSDARG00000026723 I 0.803
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.806
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.847
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.806
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.748
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.847
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.839
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.844
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.806
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.847
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.806
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.847
SYNCRIP Homo sapiens ENSG00000135316 I 0.806
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.955
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.852
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.806
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.806
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.847
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.800
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.806
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.806
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.801
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.852
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.733
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.806
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.847
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.847
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.806
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.801
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.811
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.798
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.806