e_gw1.3.432.1 (Micromonas pusilla)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw1.3.432.1 T49968_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.804
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.713
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.706
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.701
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.3.432.1 RRM 10 80
e_gw1.3.432.1 RRM 97 168

Links

Other RRM family RBPs
Other Micromonas pusilla RBPs

105 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK16552.1 Cannabis sativa PK16552.1 N 0.000
estExtDG_fgeneshEH_pg.C_710018 Emiliania huxleyi estExtDG_fgeneshEH_pg.C_710018 N 0.000
Glyma03g38550.1 Glycine max Glyma03g38550.1 N 0.000
Glyma10g28100.1 Glycine max Glyma10g28100.1 N 0.000
Glyma19g41150.1 Glycine max Glyma19g41150.1 N 0.000
Glyma20g22120.1 Glycine max Glyma20g22120.1 N 0.000
mgf008200m Mimulus guttatus mgf008200m N 0.000
mgf012653m Mimulus guttatus mgf012653m N 0.000
GRMZM2G415491 Zea mays GRMZM2G415491 N 0.000
Medtr1g103590 Medicago truncatula Medtr1g103590 N 0.000
Medtr7g134530 Medicago truncatula Medtr7g134530 N 0.000
LjB06P23.40.nc Lotus japonicus LjB06P23.40.nc N 0.000
estExtDG_fgeneshEH_pg.C_1020080 Emiliania huxleyi estExtDG_fgeneshEH_pg.C_1020080 N 0.000
cassava12877.valid.m1 Manihot esculenta cassava12877.valid.m1 N 0.000
30128.m009003 Ricinus communis 30128.m009003 N 0.000
emb1138 Arabidopsis thaliana AT5G26742-TAIR-G N 0.000
BGIOSIBCE013536 Oryza indica BGIOSIBCE013536 N 0.000
BRADI1G03180 Brachypodium distachyon BRADI1G03180 N 0.000
XM_002874266.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002106 N 0.000
GSVIVG00031360001 Vitis vinifera GSVIVG00031360001 N 0.000
LOC_Os03g61220 Oryza sativa LOC_Os03g61220 N 0.000
LOC_Os08g14290 Oryza sativa LOC_Os08g14290 N 0.000
LOC_Os11g20220 Oryza sativa LOC_Os11g20220 N 0.000
B9N3Y9_POPTR Populus trichocarpa POPTR_0005s00200 N 0.000
B9N3Z3_POPTR Populus trichocarpa POPTR_0005s00240 N 0.000
Sb01g002660 Sorghum bicolor Sb01g002660 N 0.000
ppa001778m Prunus persica ppa001778m N 0.000