PDK_20s1301681g005 (Phoenix dactylifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PDK_20s1301681g005 T58031_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.746
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1301681g005 RRM 57 127

Links

Other RRM family RBPs
Other Phoenix dactylifera RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RGD1564243 Rattus norvegicus ENSRNOG00000015276 N 0.000
LOC_Os01g61830 Oryza sativa LOC_Os01g61830 N 0.000
PHUM521160 Pediculus humanus PHUM521160 N 0.000
POPTR_0006s13510 Populus trichocarpa POPTR_0006s13510 N 0.000
B9HM02_POPTR Populus trichocarpa POPTR_0008s04540 N 0.000
B9MT73_POPTR Populus trichocarpa POPTR_0308s00200 N 0.000
SB03G039020 Sorghum bicolor Sb03g039020 N 0.000
29805.m001499 Ricinus communis 29805.m001499 N 0.000
72073 Helobdella robusta 72073 N 0.000
Aqu1.222312 Amphimedon queenslandica Aqu1.222312 N 0.000
cassava28857.valid.m1 Manihot esculenta cassava28857.valid.m1 N 0.000
cassava28858.valid.m1 Manihot esculenta cassava28858.valid.m1 N 0.000
cassava3130.m1 Manihot esculenta cassava3130.m1 N 0.000
e_gw1.19.91.1 Melampsora laricis populina e_gw1.19.91.1 N 0.000
e_gw1.2.668.1 Sporobolomyces roseus e_gw1.2.668.1 N 0.000
GSVIVG00016357001 Vitis vinifera GSVIVG00016357001 N 0.000
XM_002883888.1 Arabidopsis lyrata fgenesh2_kg.3__3143__AT2G20280.1 N 0.000
ZC3H15 Sorex araneus ENSSARG00000012071 N 0.000
ZC3H15 Sus scrofa ENSSSCG00000016026 N 0.000
ZC3H15 Spermophilus tridecemlineatus ENSSTOG00000006873 N 0.000
ZC3H15 Tupaia belangeri ENSTBEG00000015530 N 0.000
ZC3H15 Taeniopygia guttata ENSTGUG00000011131 N 0.000
ZC3H15 Tetraodon nigroviridis ENSTNIG00000009860 N 0.000
ZC3H15 Takifugu rubripes ENSTRUG00000004988 N 0.000
ZC3H15 Tarsius syrichta ENSTSYG00000011019 N 0.000
ZC3H15 Tursiops truncatus ENSTTRG00000012425 N 0.000
ZC3H15 Vicugna pacos ENSVPAG00000006980 N 0.000
zc3h15 Xenopus tropicalis ENSXETG00000013336 N 0.000
F27D4.4 Caenorhabditis elegans F27D4.4 N 0.000
GD10149 Drosophila simulans FBgn0181924 N 0.000
GK21573 Drosophila willistoni FBgn0223565 N 0.000
e_gw1.3.744.1 Selaginella moellendorfii e_gw1.3.744.1 N 0.000
e_gw.53.202.1 Nematostella vectensis e_gw.53.202.1 N 0.000
estExt_fgenesh1_pm.C_chr_90145 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_90145 N 0.000
AB07703.1 Alternaria brassicicola AB07703.1 N 0.000
Ame_R017931 Ailuropoda melanoleuca Ame_R017931 N 0.000
chr5.LjT08O17.30.nd Lotus japonicus chr5.LjT08O17.30.nd N 0.000
e_gw1.8.939.1 Pleurotus ostreatus e_gw1.8.939.1 N 0.000
estExt_fgenesh1_pm.C_180201 Phytophthora capsici estExt_fgenesh1_pm.C_180201 N 0.000
fgenesh1_pg.C_scaffold_3139000003 Phytophthora capsici fgenesh1_pg.C_scaffold_3139000003 N 0.000
MDP0000161236 Malus x domestica MDP0000161236 N 0.000
Minc08580 Meloidogyne incognita Minc08580 N 0.000
Pa_3_8730 Podospora anserina Pa_3_8730 N 0.000
ppa007639m Prunus persica ppa007639m N 0.000
ppa007903m Prunus persica ppa007903m N 0.000
XP_002158150.1 Hydra magnipapillata XP_002158150.1 N 0.000
AAH77826 Xenopus laevis AAH77826 N 0.000
BAD89267 Xenopus laevis BAD89267 N 0.000
BGIBMGA011604 Bombyx mori BGIBMGA011604 N 0.000
EFA82915.1 Polysphondylium pallidum EFA82915.1 N 0.000
estExt_Genewise1.C_60471 Cochliobolus heterostrophus C5 estExt_Genewise1.C_60471 N 0.000
estExt_Genewise1Plus.C_31385 Mycosphaerella fijiensis estExt_Genewise1Plus.C_31385 N 0.000
estExt_Genewise1Plus.C_sca_2280007 Lottia gigantea estExt_Genewise1Plus.C_sca_2280007 N 0.000
estExt_gwp.C_6160004 Branchiostoma floridae estExt_gwp.C_6160004 N 0.000
Glyma03g33420.1 Glycine max Glyma03g33420.1 N 0.000
Glyma10g05550.1 Glycine max Glyma10g05550.1 N 0.000
Glyma13g19900.1 Glycine max Glyma13g19900.1 N 0.000
Glyma19g36150.1 Glycine max Glyma19g36150.1 N 0.000
gw1.1.348.1 Phycomyces blakesleeanus gw1.1.348.1 N 0.000
gw1.233.15.1 Physcomitrella patens gw1.233.15.1 N 0.000
gwh2.4.391.1 Phanerochaete chrysosporium gwh2.4.391.1 N 0.000
PASA_GEN_1200032 Daphnia pulex PASA_GEN_1200032 N 0.000
s_451242 Phytophthora sojae s_451242 N 0.000
GRMZM2G032258 Zea mays GRMZM2G032258 N 0.000
Q6DD06 Xenopus laevis Q6DD06 N 0.000
ARB_01723 Arthroderma benhamiae ARB_01723 N 0.000
PK12342.1 Cannabis sativa PK12342.1 N 0.000
amel4_ncbi_hmm11607 Apis mellifera amel4_ncbi_hmm11607 N 0.000
DGIL_AUG5s16g7t1 Acyrtosiphon pisum DGIL_AUG5s16g7t1 N 0.000
nasonia_NCBI_hmm1144383 Nasonia vitripennis nasonia_NCBI_hmm1144383 N 0.000
AT2G20280 Arabidopsis thaliana AT2G20280-TAIR-G N 0.000
BGIOSIBCE004176 Oryza indica BGIOSIBCE004176 N 0.000
BRADI2G54220 Brachypodium distachyon BRADI2G54220 N 0.000
ATEG_06133 Aspergillus terreus CADATEAG00002525 N 0.000
CBG00292 Caenorhabditis briggsae CBG00292 N 0.000
CBN03898 Caenorhabditis brenneri CBN03898 N 0.000
CBN11546 Caenorhabditis brenneri CBN11546 N 0.000
CJA17052 Caenorhabditis japonica CJA17052 N 0.000
CRE20408 Caenorhabditis remanei CRE20408 N 0.000
ZC3H15 Anolis carolinensis ENSACAG00000001916 N 0.000
TRV_03417 Trichophyton verrucosum TRV_03417 N 0.000
TESG_03135 Trichophyton tonsurans TESG_03135 N 0.000
CC1G_07829 Coprinopsis cinerea CC1G_07829 N 0.000
CLUG_02796 Candida lusitaniae CLUG_02796 N 0.000
CPAG_03559 Candida parapsilosis CPAG_03559 N 0.000
CTRG_02162 Candida tropicalis CTRG_02162 N 0.000
DEHA0A09449g Debaryomyces hansenii DEHA0A09449g N 0.000
MCYG_02954 Microsporum canis MCYG_02954 N 0.000
MGG_07010 Magnaporthe oryzae MGG_07010 N 0.000
MGYG_00125 Microsporum gypseum MGYG_00125 N 0.000
PGUG_02031 Candida guilliermondii PGUG_02031 N 0.000
PITG_04608 Phytophthora infestans PITG_04608 N 0.000
PTTG_08784 Puccinia triticina PTTG_08784 N 0.000
SPPG_00188 Spizellomyces punctatus SPPG_00188 N 0.000
TEQG_08385 Trichophyton equinum TEQG_08385 N 0.000
TERG_01412 Trichophyton rubrum TERG_01412 N 0.000
ZC3HF_BOVIN Bos taurus ENSBTAG00000021762 N 0.000
ZC3H15 Canis familiaris ENSCAFG00000014494 N 0.000
ZC3H15 Choloepus hoffmanni ENSCHOG00000011958 N 0.000
ZC3H15 Myotis lucifugus ENSMLUG00000007741 N 0.000
ZC3H15 Macaca mulatta ENSMMUG00000017248 N 0.000
ITGAV Monodelphis domestica ENSMODG00000010653 N 0.000
Zc3h15 Mus musculus ENSMUSG00000027091 N 0.000
ZC3H15 Ornithorhynchus anatinus ENSOANG00000015742 N 0.000
ENSOCUG00000011903 Oryctolagus cuniculus ENSOCUG00000011903 N 0.000
ENSOCUG00000011909 Oryctolagus cuniculus ENSOCUG00000011909 N 0.000
ZC3H15 Otolemur garnettii ENSOGAG00000002182 N 0.000
ENSOPRG00000015790 Ochotona princeps ENSOPRG00000015790 N 0.000
ZC3H15 Oryzias latipes ENSORLG00000018606 N 0.000
ZC3H15 Procavia capensis ENSPCAG00000008499 N 0.000
ENSPPYG00000013004 Pongo pygmaeus ENSPPYG00000013004 N 0.000
ZC3H15 Pan troglodytes ENSPTRG00000012717 N 0.000
ZC3H15 Pteropus vampyrus ENSPVAG00000004828 N 0.000
ZC3H15 Microcebus murinus ENSMICG00000014245 N 0.000
ZC3H15 Meleagris gallopavo ENSMGAG00000004447 N 0.000
ENSCING00000006888 Ciona intestinalis ENSCING00000006888 N 0.000
ZC3H15 Callithrix jacchus ENSCJAG00000005931 N 0.000
ENSCPOG00000012965 Cavia porcellus ENSCPOG00000012965 N 0.000
zc3h15 Danio rerio ENSDARG00000015889 N 0.000
ZC3H15 Dasypus novemcinctus ENSDNOG00000018840 N 0.000
Zc3h15 Dipodomys ordii ENSDORG00000011664 N 0.000
LOC100068634 Equus caballus ENSECAG00000017149 N 0.000
ENSETEG00000015556 Echinops telfairi ENSETEG00000015556 N 0.000
ZC3H15 Felis catus ENSFCAG00000008213 N 0.000
ZC3H15 Homo sapiens ENSG00000065548 N 0.000
ZC3H15 Gasterosteus aculeatus ENSGACG00000011648 N 0.000
ZC3HF_CHICK Gallus gallus ENSGALG00000002670 N 0.000
ZC3H15 Gorilla gorilla ENSGGOG00000000073 N 0.000
ENSLAFG00000001563 Loxodonta africana ENSLAFG00000001563 N 0.000
Zc3h15 Rattus norvegicus ENSRNOG00000005256 N 0.000