CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PDK_20s1301681g005
(
Phoenix dactylifera
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PDK_20s1301681g005
T58031_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBM42
M142_0.6
Homo sapiens
AACUAMG
RNAcompete
Ray et al.(2013)
RNCMPT00151
0.746
ENSXETG00000017599
M237_0.6
Xenopus tropicalis
WACUAC
RNAcompete
Ray et al.(2013)
RNCMPT00282
0.718
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PDK_20s1301681g005
RRM
57
127
LFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRSGKTRGYGFVSFANPSDLAAALKEMNGKYVGNRPIK
Links
Other
RRM
family RBPs
Other
Phoenix dactylifera
RBPs
80 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NCLIV_021850
Neospora caninum
NCLIV_021850
N
0.718
TGGT1_017860
Toxoplasma gondii
TGGT1_017860
N
0.718
TGME49_003080
Toxoplasma gondii
TGME49_003080
N
0.718
TGVEG_046310
Toxoplasma gondii
TGVEG_046310
N
0.718
EDO06441.1
Babesia bovis
EDO06441.1
N
0.000
TA12210
Theileria annulata
TA12210
N
0.000