YALI0B12540g (Yarrowia lipolytica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 YALI0B12540g T06669_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
YALI0B12540g CCCH ZF 22 46
YALI0B12540g CCCH ZF 51 74

Links

Other CCCH ZF family RBPs
Other Yarrowia lipolytica RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
25080_YPL054W Saccharomyces bayanus 25080_YPL054W N 0.700
AB08315.1 Alternaria brassicicola AB08315.1 N 0.760
ACLA_033580 Aspergillus clavatus CADACLAG00003610 N 0.712
ADR062W Ashbya gossypii ADR062W N 0.820
AFLA_103810 Aspergillus flavus CADAFLAG00012116 N 0.745
AFUA_3G05570 Aspergillus fumigatus CADAFUAG00005783 N 0.745
An11g11070 Aspergillus niger CADANGAG00009424 N 0.745
ANIA_03447 Aspergillus nidulans CADANIAG00009587 N 0.745
AO090020000028 Aspergillus oryzae CADAORAG00006562 N 0.745
ATEG_08978 Aspergillus terreus CADATEAG00006440 N 0.745
Cd36_85970 Candida dubliniensis Cd36_85970 N 0.755
CIMG_10872 Coccidioides immitis CIMG_10872 N 0.745
CLUG_02022 Candida lusitaniae CLUG_02022 N 0.735
CPAG_02338 Candida parapsilosis CPAG_02338 N 0.735
CPSG_06815 Coccidioides posadasii CPSG_06815 N 0.745
CTRG_02259 Candida tropicalis CTRG_02259 N 0.700
DEHA0D17303g Debaryomyces hansenii DEHA0D17303g N 0.755
EAT89389.2 Phaeosphaeria nodorum EAT89389.2 N 0.760
estExt_fgenesh1_pg.C_160206 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_160206 N 0.760
EuGene12000543 Heterobasidion annosum EuGene12000543 N 0.714
e_gwh1.2.1.2495.1 Pichia stipitis e_gwh1.2.1.2495.1 N 0.735
fgenesh1_pm.00118_#_26 Aspergillus carbonarius fgenesh1_pm.00118_#_26 N 0.745
GSTUMT00003772001 Tuber melanosporum GSTUMT00003772001 N 0.800
HCAG_10294 Histoplasma capsulatum HCAG_10294 N 0.745
KLLA0B09878g Kluyveromyces lactis KLLA0B09878g N 0.740
KLTH0E11836g Kluyveromyces thermotolerans KLTH0E11836g N 0.780
MCYG_08235 Microsporum canis MCYG_08235 N 0.725
MGYG_05636 Microsporum gypseum MGYG_05636 N 0.725
NFIA_071620 Neosartorya fischeri CADNFIAG00006536 N 0.745
orf19.7385 Candida albicans orf19.7385 N 0.755
PABG_05614 Paracoccidioides brasiliensis PABG_05614 N 0.745
Pc20g08250 Penicillium chrysogenum Pc20g08250 N 0.745
PMAA_005110 Penicillium marneffei PMAA_005110 N 0.745
PTRG_01963 Pyrenophora tritici repentis PTRG_01963 N 0.760
SAKL0H10846g Lachancea kluyveri SAKL0H10846g N 0.820
Scas_Contig567.6 Saccharomyces castellii Scas_Contig567.6 N 0.700
SJAG_03191 Schizosaccharomyces japonicus SJAG_03191 N 0.700
SNOG_02658 Stagonospora nodorum SNOG_02658 N 0.760
TEQG_01582 Trichophyton equinum TEQG_01582 N 0.725
TERG_02518 Trichophyton rubrum TERG_02518 N 0.725
UREG_06970 Uncinocarpus reesii UREG_06970 N 0.745
XP_002493509.1 Pichia pastoris XP_002493509.1 N 0.796