SRZ-21 (Arabidopsis thaliana)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		AT1G23860-TAIR-G T07150_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT1G23860.1-P RRM 4 63
AT1G23860.1-P CCHC ZF 89 106
AT1G23860.2-P RRM 4 63
AT1G23860.2-P CCHC ZF 89 106
AT1G23860.3-P RRM 4 63
AT1G23860.3-P CCHC ZF 89 106

Links

Other CCHC ZF,RRM family RBPs
Other Arabidopsis thaliana RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28610.m000073 Ricinus communis 28610.m000073 N 0.821
29848.m004475 Ricinus communis 29848.m004475 N 0.808
B9ILD8_POPTR Populus trichocarpa POPTR_0018s03390 N 0.797
B9N668_POPTR Populus trichocarpa POPTR_0006s28720 N 0.795
BGIOSIBCE008925 Oryza indica BGIOSIBCE008925 N 0.722
BGIOSIBCE020929 Oryza indica BGIOSIBCE020929 N 0.759
BRADI1G46980 Brachypodium distachyon BRADI1G46980 N 0.734
BRADI3G48460 Brachypodium distachyon BRADI3G48460 N 0.709
BRADI3G53760 Brachypodium distachyon BRADI3G53760 N 0.709
cassava18359.valid.m1 Manihot esculenta cassava18359.valid.m1 N 0.808
cassava37340.valid.m1 Manihot esculenta cassava37340.valid.m1 N 0.808
cassava38162.valid.m1 Manihot esculenta cassava38162.valid.m1 N 0.821
cassava8058.valid.m1 Manihot esculenta cassava8058.valid.m1 N 0.795
Cucsa.285940 Cucumis sativus Cucsa.285940 N 0.846
Cucsa.311100 Cucumis sativus Cucsa.311100 N 0.808
e_gw1.207.127.1 Physcomitrella patens e_gw1.207.127.1 N 0.734
e_gw1.332.33.1 Physcomitrella patens e_gw1.332.33.1 N 0.734
Glyma08g39830.1 Glycine max Glyma08g39830.1 N 0.833
Glyma14g17930.1 Glycine max Glyma14g17930.1 N 0.795
Glyma17g29080.1 Glycine max Glyma17g29080.1 N 0.795
Glyma18g18860.1 Glycine max Glyma18g18860.1 N 0.821
GRMZM2G027105 Zea mays GRMZM2G027105 N 0.747
GRMZM2G070239 Zea mays GRMZM2G070239 N 0.747
GRMZM2G080930 Zea mays GRMZM2G080930 N 0.734
GRMZM2G151923 Zea mays GRMZM2G151923 N 0.747
GSVIVG00020220001 Vitis vinifera GSVIVG00020220001 N 0.782
GSVIVG00033172001 Vitis vinifera GSVIVG00033172001 N 0.821
gw1.3.1555.1 Selaginella moellendorfii gw1.3.1555.1 N 0.769
LjSGA_021019.1 Lotus japonicus LjSGA_021019.1 N 0.846
LOC_Os02g39720 Oryza sativa LOC_Os02g39720 N 0.747
LOC_Os02g54770 Oryza sativa LOC_Os02g54770 N 0.722
LOC_Os06g08840 Oryza sativa LOC_Os06g08840 N 0.759
MDP0000256723 Malus x domestica MDP0000256723 N 0.821
MDP0000870155 Malus x domestica MDP0000870155 N 0.846
Medtr1g010600 Medicago truncatula Medtr1g010600 N 0.782
Medtr3g133170 Medicago truncatula Medtr3g133170 N 0.744
mgf005494m Mimulus guttatus mgf005494m N 0.821
mgf014721m Mimulus guttatus mgf014721m N 0.821
PDK_20s1302151g001 Phoenix dactylifera PDK_20s1302151g001 N 0.795
PK15383.1 Cannabis sativa PK15383.1 N 0.808
PK23390.1 Cannabis sativa PK23390.1 N 0.833
ppa012111m Prunus persica ppa012111m N 0.821
ppa012147m Prunus persica ppa012147m N 0.756
RSZ22a Arabidopsis thaliana AT2G24590-TAIR-G N 0.808
Sb04g025670 Sorghum bicolor Sb04g025670 N 0.747
SB04G035540 Sorghum bicolor Sb04g035540 N 0.747
SB10G005960 Sorghum bicolor Sb10g005960 N 0.759
SRZ-22 Arabidopsis thaliana AT4G31580-TAIR-G N 0.846
XM_002869274.1 Arabidopsis lyrata fgenesh2_kg.7__1015__AT4G31580.1 N 0.808
XM_002878724.1 Arabidopsis lyrata fgenesh2_kg.4__375__AT2G24590.1 N 0.808
XM_002893265.1 Arabidopsis lyrata fgenesh2_kg.1__2600__AT1G23860.3 N 0.962