cassava38162.valid.m1 (Manihot esculenta)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		cassava38162.valid.m1 T07511_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava38162.valid.m1 RRM 4 63
cassava38162.valid.m1 CCHC ZF 92 109

Links

Other CCHC ZF,RRM family RBPs
Other Manihot esculenta RBPs

51 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28610.m000073 Ricinus communis 28610.m000073 N 0.974
29848.m004475 Ricinus communis 29848.m004475 N 0.872
B9ILD8_POPTR Populus trichocarpa POPTR_0018s03390 N 0.848
B9N668_POPTR Populus trichocarpa POPTR_0006s28720 N 0.885
BGIOSIBCE008925 Oryza indica BGIOSIBCE008925 N 0.722
BGIOSIBCE020929 Oryza indica BGIOSIBCE020929 N 0.772
BRADI1G46980 Brachypodium distachyon BRADI1G46980 N 0.759
BRADI3G48460 Brachypodium distachyon BRADI3G48460 N 0.722
BRADI3G53760 Brachypodium distachyon BRADI3G53760 N 0.709
cassava18359.valid.m1 Manihot esculenta cassava18359.valid.m1 N 0.872
cassava37340.valid.m1 Manihot esculenta cassava37340.valid.m1 N 0.949
cassava8058.valid.m1 Manihot esculenta cassava8058.valid.m1 N 0.885
Cucsa.285940 Cucumis sativus Cucsa.285940 N 0.910
Cucsa.311100 Cucumis sativus Cucsa.311100 N 0.872
e_gw1.207.127.1 Physcomitrella patens e_gw1.207.127.1 N 0.797
e_gw1.332.33.1 Physcomitrella patens e_gw1.332.33.1 N 0.797
Glyma08g39830.1 Glycine max Glyma08g39830.1 N 0.936
Glyma14g17930.1 Glycine max Glyma14g17930.1 N 0.872
Glyma17g29080.1 Glycine max Glyma17g29080.1 N 0.872
Glyma18g18860.1 Glycine max Glyma18g18860.1 N 0.923
GRMZM2G027105 Zea mays GRMZM2G027105 N 0.785
GRMZM2G070239 Zea mays GRMZM2G070239 N 0.759
GRMZM2G080930 Zea mays GRMZM2G080930 N 0.747
GRMZM2G151923 Zea mays GRMZM2G151923 N 0.747
GSVIVG00020220001 Vitis vinifera GSVIVG00020220001 N 0.910
GSVIVG00033172001 Vitis vinifera GSVIVG00033172001 N 0.885
gw1.3.1555.1 Selaginella moellendorfii gw1.3.1555.1 N 0.782
LjSGA_021019.1 Lotus japonicus LjSGA_021019.1 N 0.923
LOC_Os02g39720 Oryza sativa LOC_Os02g39720 N 0.785
LOC_Os02g54770 Oryza sativa LOC_Os02g54770 N 0.734
LOC_Os06g08840 Oryza sativa LOC_Os06g08840 N 0.772
MDP0000256723 Malus x domestica MDP0000256723 N 0.872
MDP0000870155 Malus x domestica MDP0000870155 N 0.885
Medtr1g010600 Medicago truncatula Medtr1g010600 N 0.885
Medtr3g133170 Medicago truncatula Medtr3g133170 N 0.821
mgf005494m Mimulus guttatus mgf005494m N 0.846
mgf014721m Mimulus guttatus mgf014721m N 0.846
PDK_20s1302151g001 Phoenix dactylifera PDK_20s1302151g001 N 0.923
PK15383.1 Cannabis sativa PK15383.1 N 0.859
PK23390.1 Cannabis sativa PK23390.1 N 0.936
ppa012111m Prunus persica ppa012111m N 0.897
ppa012147m Prunus persica ppa012147m N 0.872
RSZ22a Arabidopsis thaliana AT2G24590-TAIR-G N 0.821
Sb04g025670 Sorghum bicolor Sb04g025670 N 0.772
SB04G035540 Sorghum bicolor Sb04g035540 N 0.759
SB10G005960 Sorghum bicolor Sb10g005960 N 0.759
SRZ-21 Arabidopsis thaliana AT1G23860-TAIR-G N 0.821
SRZ-22 Arabidopsis thaliana AT4G31580-TAIR-G N 0.846
XM_002869274.1 Arabidopsis lyrata fgenesh2_kg.7__1015__AT4G31580.1 N 0.821
XM_002878724.1 Arabidopsis lyrata fgenesh2_kg.4__375__AT2G24590.1 N 0.846
XM_002893265.1 Arabidopsis lyrata fgenesh2_kg.1__2600__AT1G23860.3 N 0.846