CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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YBX1
(
Tupaia belangeri
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
ENSTBEG00000015642
T17034_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTBEP00000013575
CSD
87
128
XXTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP
Links
Other
CSD
family RBPs
Other
Tupaia belangeri
RBPs
30 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R016025
Ailuropoda melanoleuca
Ame_R016025
I
0.741
Ame_R016026
Ailuropoda melanoleuca
Ame_R016026
N
0.952
Ame_R019252
Ailuropoda melanoleuca
Ame_R019252
I
0.755
CSDA
Felis catus
ENSFCAG00000018959
I
0.755
CSDA
Oryctolagus cuniculus
ENSOCUG00000001889
I
0.755
CSDA
Spermophilus tridecemlineatus
ENSSTOG00000002108
I
0.736
CSDA
Tursiops truncatus
ENSTTRG00000008045
I
0.784
CSDA
Gorilla gorilla
ENSGGOG00000001352
I
0.741
ENSETEG00000004125
Echinops telfairi
ENSETEG00000004125
I
0.755
ENSGGOG00000004758
Gorilla gorilla
ENSGGOG00000004758
I
0.755
ENSGGOG00000023581
Gorilla gorilla
ENSGGOG00000023581
I
0.804
ENSOCUG00000021258
Oryctolagus cuniculus
ENSOCUG00000021258
N
0.844
ENSOCUG00000022716
Oryctolagus cuniculus
ENSOCUG00000022716
N
0.776
ENSOCUG00000024588
Oryctolagus cuniculus
ENSOCUG00000024588
N
0.909
ENSOCUG00000026608
Oryctolagus cuniculus
ENSOCUG00000026608
N
0.864
ENSSARG00000007896
Sorex araneus
ENSSARG00000007896
I
0.755
YB-1
Homo sapiens
ENSG00000065978
D
0.755
YBOX1_RABIT
Oryctolagus cuniculus
ENSOCUG00000028047
I
0.769
Ybx1
Dipodomys ordii
ENSDORG00000016627
N
1.000
YBX1
Ornithorhynchus anatinus
ENSOANG00000011725
I
0.952
YBX1
Procavia capensis
ENSPCAG00000008397
I
0.755
YBX2
Microcebus murinus
ENSMICG00000012453
I
0.745
YBX2
Vicugna pacos
ENSVPAG00000003104
I
0.745
ybx2
Xenopus tropicalis
ENSXETG00000025267
N
0.905
YBX2
Loxodonta africana
ENSLAFG00000014006
I
0.000
YBX2
Otolemur garnettii
ENSOGAG00000004392
I
0.745
YBX2
Oryctolagus cuniculus
ENSOCUG00000015064
I
0.000