D4A8D6_RAT (Rattus norvegicus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSRNOG00000006713 T19428_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.797
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.760
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.750
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.750
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.703
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000045965 KH 15 75
ENSRNOP00000045965 KH 100 166
ENSRNOP00000045965 KH 254 316

Links

Other KH family RBPs
Other Rattus norvegicus RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.740
AAH41241 Xenopus laevis AAH41241 I 0.792
AAH84195 Xenopus laevis AAH84195 I 0.792
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.750
Ame_R011627 Ailuropoda melanoleuca Ame_R011627 I 0.708
CAB50743 Xenopus laevis CAB50743 I 0.792
CAD29864 Xenopus laevis CAD29864 I 0.792
D4ADH2_RAT Rattus norvegicus ENSRNOG00000039295 I 0.738
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.797
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.703
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.797
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.797
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.745
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.750
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.797
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.797
ENSMODG00000017748 Monodelphis domestica ENSMODG00000017748 I 0.750
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.797
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.760
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.760
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.797
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.750
ENSRNOG00000019487 Rattus norvegicus ENSRNOG00000019487 I 0.733
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.766
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.740
LOC100050101 Equus caballus ENSECAG00000012413 I 0.703
LOC100050579 Equus caballus ENSECAG00000002544 I 0.750
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.786
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.703
LOC100409398 Callithrix jacchus ENSCJAG00000007694 I 0.755
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.750
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.750
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.750
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.750
PCBP1 Callithrix jacchus ENSCJAG00000004017 I 0.724
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.750
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.729
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.750
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.760
PCBP1 Homo sapiens ENSG00000169564 D 0.750
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.750
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.750
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.797
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.797
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.797
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.797
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.797
PCBP2 Tarsius syrichta ENSTSYG00000009771 I 0.750
PCBP2 Echinops telfairi ENSETEG00000014741 I 0.735
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.797
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.797
PCBP2 Macropus eugenii ENSMEUG00000001887 I 0.724
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.797
pcbp2 Danio rerio ENSDARG00000013184 D 0.760
PCBP2 Homo sapiens ENSG00000197111 D 0.797
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.797
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.797
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.797
PCBP2 Equus caballus ENSECAG00000022389 I 0.797
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.797
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.703
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.792
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.703
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.703
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.703
PCBP3 Homo sapiens ENSG00000183570 I 0.703
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.703
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.703
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.703
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.703
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.703
PCBP3 Gallus gallus ENSGALG00000013155 I 0.708
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.703
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.708
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.797