ENSGACG00000006681 (Gasterosteus aculeatus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSGACG00000006681 T18831_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.968
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.947
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.888
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.888
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.862
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000008891 KH 15 75
ENSGACP00000008891 KH 99 162
ENSGACP00000008891 KH 250 312
ENSGACP00000008898 KH 37 97
ENSGACP00000008898 KH 121 184
ENSGACP00000008898 KH 272 334
ENSGACP00000008908 KH 15 75
ENSGACP00000008908 KH 99 162
ENSGACP00000008908 KH 279 341

Links

Other KH family RBPs
Other Gasterosteus aculeatus RBPs

124 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.989
pcbp2 Danio rerio ENSDARG00000013184 D 0.968
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.968
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.952
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.947
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.947
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.947
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.947
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.947
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.947
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.947
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.947
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.947
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.947
AAH84195 Xenopus laevis AAH84195 I 0.947
CAB50743 Xenopus laevis CAB50743 I 0.947
CAD29864 Xenopus laevis CAD29864 I 0.947
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.947
AAH41241 Xenopus laevis AAH41241 I 0.947
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.947
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.947
PCBP2 Equus caballus ENSECAG00000022389 I 0.947
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.947
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.947
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.947
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.947
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.947
PCBP2 Homo sapiens ENSG00000197111 D 0.947
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.947
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.947
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.947
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.947
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.941
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.936
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.936
PCBP2 Tarsius syrichta ENSTSYG00000009771 I 0.899
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.888
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.888
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.888
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.888
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.888
LOC100050579 Equus caballus ENSECAG00000002544 I 0.888
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.888
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.888
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.888
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.888
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.888
PCBP1 Homo sapiens ENSG00000169564 D 0.888
LOC100409398 Callithrix jacchus ENSCJAG00000007694 I 0.878
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.872
PCBP3 Gallus gallus ENSGALG00000013155 I 0.872
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.872
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.872
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.867
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.862
PCBP2 Macropus eugenii ENSMEUG00000001887 I 0.862
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.862
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.862
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.862
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.862
PCBP3 Homo sapiens ENSG00000183570 I 0.862
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.862
ENSMODG00000017748 Monodelphis domestica ENSMODG00000017748 I 0.862
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.862
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.862
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.862
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.862
LOC100050101 Equus caballus ENSECAG00000012413 I 0.862
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.862
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.856
PCBP1 Callithrix jacchus ENSCJAG00000004017 I 0.851
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.851
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.851
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.851
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.851
Ame_R011627 Ailuropoda melanoleuca Ame_R011627 I 0.846
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.846
PCBP2 Echinops telfairi ENSETEG00000014741 I 0.843
D4ADH2_RAT Rattus norvegicus ENSRNOG00000039295 I 0.836
ENSRNOG00000019487 Rattus norvegicus ENSRNOG00000019487 I 0.831
PCBP3 Gallus gallus ENSGALG00000004394 I 0.824
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.824
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.824
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.815
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.812
PCBP2 Myotis lucifugus ENSMLUG00000009971 I 0.809
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.793
PCBP3 Loxodonta africana ENSLAFG00000020835 I 0.777
PCBP1 Taeniopygia guttata ENSTGUG00000016232 I 0.771
Ame_R007160 Ailuropoda melanoleuca Ame_R007160 I 0.771
pcbp3 Danio rerio ENSDARG00000054378 I 0.766
PCBP2 Tupaia belangeri ENSTBEG00000015592 I 0.766
PCBP3 Microcebus murinus ENSMICG00000012679 I 0.766
PCBP3 Otolemur garnettii ENSOGAG00000008044 I 0.761
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.753
D4A8D6_RAT Rattus norvegicus ENSRNOG00000006713 I 0.750
ENSTRUG00000017789 Takifugu rubripes ENSTRUG00000017789 I 0.742
PCBP4 Tetraodon nigroviridis ENSTNIG00000017887 I 0.741
PCBP4 Takifugu rubripes ENSTRUG00000007426 I 0.741
ENSLAFG00000025534 Loxodonta africana ENSLAFG00000025534 I 0.735
PCBP4 Gasterosteus aculeatus ENSGACG00000002664 I 0.735
PCBP3 Felis catus ENSFCAG00000014812 I 0.734
PCBP3 Myotis lucifugus ENSMLUG00000003074 I 0.734
PCBP1 Otolemur garnettii ENSOGAG00000008557 I 0.725
ENSMODG00000020653 Monodelphis domestica ENSMODG00000020653 I 0.725
PCBP3 Pteropus vampyrus ENSPVAG00000000832 I 0.718
fgenesh2_pg.scaffold_166000022 Branchiostoma floridae fgenesh2_pg.scaffold_166000022 I 0.714
estExt_gwp.C_3950051 Branchiostoma floridae estExt_gwp.C_3950051 I 0.714
PCBP4 Anolis carolinensis ENSACAG00000011701 I 0.711
PCBP4 Ornithorhynchus anatinus ENSOANG00000014110 I 0.711
ENSOCUG00000021452 Oryctolagus cuniculus ENSOCUG00000021452 I 0.707
PCBP4 Gorilla gorilla ENSGGOG00000012474 I 0.700
PCBP4 Homo sapiens ENSG00000090097 I 0.700
PCBP4 Macaca mulatta ENSMMUG00000022205 I 0.700
PCBP4 Oryctolagus cuniculus ENSOCUG00000025336 I 0.700
PCBP4 Pan troglodytes ENSPTRG00000014983 I 0.700
Pcbp4 Rattus norvegicus ENSRNOG00000012406 I 0.700
A6MK33_CALJA Callithrix jacchus ENSCJAG00000005783 I 0.700
ENSPPYG00000013822 Pongo pygmaeus ENSPPYG00000013822 I 0.700
PCBP4_BOVIN Bos taurus ENSBTAG00000018622 I 0.700
Pcbp4 Mus musculus ENSMUSG00000023495 I 0.700
PCBP4 Canis familiaris ENSCAFG00000010019 I 0.700
LOC100060660 Equus caballus ENSECAG00000024218 I 0.700