LOC_Os02g10920 (Oryza sativa)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 LOC_Os02g10920 T27050_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os02g10920.1 RanBP ZF 4 33
LOC_Os02g10920.1 RanBP ZF 66 93
LOC_Os02g10920.1 RanBP ZF 131 162
LOC_Os02g10920.2 RanBP ZF 4 33
LOC_Os02g10920.2 RanBP ZF 66 93
LOC_Os02g10920.2 RanBP ZF 131 162
LOC_Os02g10920.3 RanBP ZF 4 33
LOC_Os02g10920.3 RanBP ZF 66 93
LOC_Os02g10920.3 RanBP ZF 131 162
LOC_Os02g10920.4 RanBP ZF 4 33
LOC_Os02g10920.4 RanBP ZF 66 93
LOC_Os02g10920.4 RanBP ZF 131 162
LOC_Os02g10920.5 RanBP ZF 4 33
LOC_Os02g10920.5 RanBP ZF 66 93
LOC_Os02g10920.5 RanBP ZF 131 162
LOC_Os02g10920.6 RanBP ZF 4 33
LOC_Os02g10920.6 RanBP ZF 66 93
LOC_Os02g10920.6 RanBP ZF 131 162

Links

Other RanBP ZF family RBPs
Other Oryza sativa RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29841.m002811 Ricinus communis 29841.m002811 N 0.763
29848.m004659 Ricinus communis 29848.m004659 N 0.809
A9P992_POPTR Populus trichocarpa POPTR_0006s26750 N 0.806
A9PB85_POPTR Populus trichocarpa POPTR_0001s17280 N 0.806
AT3G15680 Arabidopsis thaliana AT3G15680-TAIR-G N 0.785
AT5G25490 Arabidopsis thaliana AT5G25490-TAIR-G N 0.766
B9GWD5_POPTR Populus trichocarpa POPTR_0003s05990 N 0.796
B9IKV1_POPTR Populus trichocarpa POPTR_0018s01490 N 0.806
BGIOSIBCE006059 Oryza indica BGIOSIBCE006059 N 0.922
BRADI1G51070 Brachypodium distachyon BRADI1G51070 N 0.733
BRADI3G07610 Brachypodium distachyon BRADI3G07610 N 0.934
cassava20678.m1 Manihot esculenta cassava20678.m1 N 0.758
cassava25022.valid.m1 Manihot esculenta cassava25022.valid.m1 N 0.753
cassava25023.valid.m1 Manihot esculenta cassava25023.valid.m1 N 0.753
cassava36675.valid.m1 Manihot esculenta cassava36675.valid.m1 N 0.753
cassava8165.valid.m1 Manihot esculenta cassava8165.valid.m1 N 0.798
chr1.CM0442.230.nd Lotus japonicus chr1.CM0442.230.nd N 0.777
Cucsa.096580 Cucumis sativus Cucsa.096580 N 0.830
Cucsa.105250 Cucumis sativus Cucsa.105250 N 0.774
Cucsa.162240 Cucumis sativus Cucsa.162240 N 0.787
fgenesh1_pm.C_scaffold_87000018 Selaginella moellendorfii fgenesh1_pm.C_scaffold_87000018 N 0.747
Glyma04g07270.1 Glycine max Glyma04g07270.1 N 0.798
Glyma06g07350.1 Glycine max Glyma06g07350.1 N 0.798
Glyma07g03620.1 Glycine max Glyma07g03620.1 N 0.798
Glyma08g22470.1 Glycine max Glyma08g22470.1 N 0.787
GRMZM2G094353 Zea mays GRMZM2G094353 N 0.890
GRMZM2G116079 Zea mays GRMZM2G116079 N 0.912
GRMZM2G404897 Zea mays GRMZM2G404897 N 0.767
GSVIVG00017252001 Vitis vinifera GSVIVG00017252001 N 0.817
GSVIVG00035819001 Vitis vinifera GSVIVG00035819001 N 0.819
LOC_Os06g04920 Oryza sativa LOC_Os06g04920 N 0.767
MDP0000240686 Malus x domestica MDP0000240686 N 0.809
MDP0000269288 Malus x domestica MDP0000269288 N 0.787
MDP0000876872 Malus x domestica MDP0000876872 N 0.798
Medtr3g136630 Medicago truncatula Medtr3g136630 N 0.766
ppa012687m Prunus persica ppa012687m N 0.819
ppa012737m Prunus persica ppa012737m N 0.798
Sb04g007110 Sorghum bicolor Sb04g007110 N 0.890
SB10G002790 Sorghum bicolor Sb10g002790 N 0.756
XM_002872121.1 Arabidopsis lyrata fgenesh2_kg.6__2541__AT5G25490.1 N 0.755
XM_002882911.1 Arabidopsis lyrata fgenesh2_kg.3__1723__AT3G15680.1 N 0.774