29848.m004659 (Ricinus communis)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 29848.m004659 T27275_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29848.m004659 RanBP ZF 3 32
29848.m004659 RanBP ZF 57 88
29848.m004659 RanBP ZF 116 147

Links

Other RanBP ZF family RBPs
Other Ricinus communis RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29841.m002811 Ricinus communis 29841.m002811 N 0.840
A9P992_POPTR Populus trichocarpa POPTR_0006s26750 N 0.926
A9PB85_POPTR Populus trichocarpa POPTR_0001s17280 N 0.862
AT3G15680 Arabidopsis thaliana AT3G15680-TAIR-G N 0.840
AT5G25490 Arabidopsis thaliana AT5G25490-TAIR-G N 0.862
B9GWD5_POPTR Populus trichocarpa POPTR_0003s05990 N 0.872
B9IKV1_POPTR Populus trichocarpa POPTR_0018s01490 N 0.915
BGIOSIBCE006059 Oryza indica BGIOSIBCE006059 N 0.745
BRADI1G51070 Brachypodium distachyon BRADI1G51070 N 0.713
BRADI3G07610 Brachypodium distachyon BRADI3G07610 N 0.809
cassava20678.m1 Manihot esculenta cassava20678.m1 N 0.872
cassava25022.valid.m1 Manihot esculenta cassava25022.valid.m1 N 0.819
cassava25023.valid.m1 Manihot esculenta cassava25023.valid.m1 N 0.819
cassava36675.valid.m1 Manihot esculenta cassava36675.valid.m1 N 0.830
cassava8165.valid.m1 Manihot esculenta cassava8165.valid.m1 N 0.968
chr1.CM0442.230.nd Lotus japonicus chr1.CM0442.230.nd N 0.830
Cucsa.096580 Cucumis sativus Cucsa.096580 N 0.862
Cucsa.105250 Cucumis sativus Cucsa.105250 N 0.787
Cucsa.162240 Cucumis sativus Cucsa.162240 N 0.851
Glyma04g07270.1 Glycine max Glyma04g07270.1 N 0.872
Glyma06g07350.1 Glycine max Glyma06g07350.1 N 0.872
Glyma07g03620.1 Glycine max Glyma07g03620.1 N 0.840
Glyma08g22470.1 Glycine max Glyma08g22470.1 N 0.830
GRMZM2G094353 Zea mays GRMZM2G094353 N 0.787
GRMZM2G116079 Zea mays GRMZM2G116079 N 0.809
GRMZM2G404897 Zea mays GRMZM2G404897 N 0.755
GSVIVG00017252001 Vitis vinifera GSVIVG00017252001 N 0.862
GSVIVG00035819001 Vitis vinifera GSVIVG00035819001 N 0.904
LOC_Os02g10920 Oryza sativa LOC_Os02g10920 N 0.809
LOC_Os06g04920 Oryza sativa LOC_Os06g04920 N 0.745
MDP0000240686 Malus x domestica MDP0000240686 N 0.851
MDP0000269288 Malus x domestica MDP0000269288 N 0.883
MDP0000876872 Malus x domestica MDP0000876872 N 0.904
Medtr3g136630 Medicago truncatula Medtr3g136630 N 0.830
ppa012687m Prunus persica ppa012687m N 0.851
ppa012737m Prunus persica ppa012737m N 0.915
Sb04g007110 Sorghum bicolor Sb04g007110 N 0.809
SB10G002790 Sorghum bicolor Sb10g002790 N 0.745
XM_002872121.1 Arabidopsis lyrata fgenesh2_kg.6__2541__AT5G25490.1 N 0.851
XM_002882911.1 Arabidopsis lyrata fgenesh2_kg.3__1723__AT3G15680.1 N 0.840