CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TIAL1
(
Canis familiaris
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCAFG00000012171
T35105_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
TIA1
M156_0.6
Homo sapiens
WUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00165
0.824
TIA1
M075_0.6
Homo sapiens
UUUUUBK
RNAcompete
Ray et al.(2013)
RNCMPT00077
0.824
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000017967
RRM
11
96
LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK
ENSCAFP00000017967
RRM
116
186
VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR
ENSCAFP00000017967
RRM
224
288
VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK
Links
Other
RRM
family RBPs
Other
Canis familiaris
RBPs
70 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LbrM28_V2.0310
Leishmania braziliensis
LbrM28_V2.0310
N
0.000
LinJ28_V3.0440
Leishmania infantum
LinJ28_V3.0440
N
0.000