PABPC4 (Gallus gallus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGALG00000003800 T37625_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.939
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.892
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.892
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.892
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.828
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000006018 RRM 13 83
ENSGALP00000006018 RRM 101 169
ENSGALP00000006018 RRM 193 261
ENSGALP00000006018 RRM 296 364

Links

Other RRM family RBPs
Other Gallus gallus RBPs

184 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ACLA_074000 Aspergillus clavatus CADACLAG00007261 N 0.000
ATEG_01323 Aspergillus terreus CADATEAG00002653 N 0.000
BDBG_03236 Blastomyces dermatitidis BDBG_03236 N 0.000
estExt_Genewise1Plus.C_140444 Mycosphaerella fijiensis estExt_Genewise1Plus.C_140444 N 0.000
estExt_Genewise1Plus.C_210177 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_210177 N 0.000
estExt_GeneWisePlus.C_20165 Trichoderma reesei estExt_GeneWisePlus.C_20165 N 0.000
e_gw1.2.59.1 Trichoderma atroviride e_gw1.2.59.1 N 0.000
fgenesh1_pg.00866_#_126 Aspergillus carbonarius fgenesh1_pg.00866_#_126 N 0.000
FGSG_06181 Fusarium graminearum FGSG_06181 N 0.000
FOXG_08528 Fusarium oxysporum FOXG_08528 N 0.000
FVEG_06144 Fusarium verticillioides FVEG_06144 N 0.000
HCAG_05999 Histoplasma capsulatum HCAG_05999 N 0.000
MGYG_03096 Microsporum gypseum MGYG_03096 N 0.000
PABG_06460 Paracoccidioides brasiliensis PABG_06460 N 0.000
Pc12g11760 Penicillium chrysogenum Pc12g11760 N 0.000
TEQG_01206 Trichophyton equinum TEQG_01206 N 0.000
TERG_04920 Trichophyton rubrum TERG_04920 N 0.000
TESG_05929 Trichophyton tonsurans TESG_05929 N 0.000
UREG_06534 Uncinocarpus reesii UREG_06534 N 0.000