CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PABPC4
(
Gallus gallus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGALG00000003800
T37625_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPC4
M042_0.6
Homo sapiens
AAAAAAR
RNAcompete
Ray et al.(2013)
RNCMPT00043
0.939
PABPC1
M349_0.6
Homo sapiens
ACDAAYM
SELEX
Cook et al.(2011)
950_7908267
0.892
PABPC1
M275_0.6
Homo sapiens
AAAAA
SELEX
Cook et al.(2011)
24_7908267
0.892
PABPC1
M146_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00155
0.892
PABPC3
M144_0.6
Homo sapiens
RAAAACM
RNAcompete
Ray et al.(2013)
RNCMPT00153
0.828
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGALP00000006018
RRM
13
83
LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIR
ENSGALP00000006018
RRM
101
169
VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVF
ENSGALP00000006018
RRM
193
261
VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMV
ENSGALP00000006018
RRM
296
364
LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY
Links
Other
RRM
family RBPs
Other
Gallus gallus
RBPs
184 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACLA_074000
Aspergillus clavatus
CADACLAG00007261
N
0.000
ATEG_01323
Aspergillus terreus
CADATEAG00002653
N
0.000
BDBG_03236
Blastomyces dermatitidis
BDBG_03236
N
0.000
estExt_Genewise1Plus.C_140444
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_140444
N
0.000
estExt_Genewise1Plus.C_210177
Cochliobolus heterostrophus C5
estExt_Genewise1Plus.C_210177
N
0.000
estExt_GeneWisePlus.C_20165
Trichoderma reesei
estExt_GeneWisePlus.C_20165
N
0.000
e_gw1.2.59.1
Trichoderma atroviride
e_gw1.2.59.1
N
0.000
fgenesh1_pg.00866_#_126
Aspergillus carbonarius
fgenesh1_pg.00866_#_126
N
0.000
FGSG_06181
Fusarium graminearum
FGSG_06181
N
0.000
FOXG_08528
Fusarium oxysporum
FOXG_08528
N
0.000
FVEG_06144
Fusarium verticillioides
FVEG_06144
N
0.000
HCAG_05999
Histoplasma capsulatum
HCAG_05999
N
0.000
MGYG_03096
Microsporum gypseum
MGYG_03096
N
0.000
PABG_06460
Paracoccidioides brasiliensis
PABG_06460
N
0.000
Pc12g11760
Penicillium chrysogenum
Pc12g11760
N
0.000
TEQG_01206
Trichophyton equinum
TEQG_01206
N
0.000
TERG_04920
Trichophyton rubrum
TERG_04920
N
0.000
TESG_05929
Trichophyton tonsurans
TESG_05929
N
0.000
UREG_06534
Uncinocarpus reesii
UREG_06534
N
0.000