HNRNPR (Procavia capensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPCAG00000010462 T40374_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.815
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.761
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000009746 RRM 114 176
ENSPCAP00000009746 RRM 221 265
ENSPCAP00000009746 RRM 293 355

Links

Other RRM family RBPs
Other Procavia capensis RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.830
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.731
AAH70529 Xenopus laevis AAH70529 I 0.726
AAI61702 Xenopus laevis AAI61702 I 0.756
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.830
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.731
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.722
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.830
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.815
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.830
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.731
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.761
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.721
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.814
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.988
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.815
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.795
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.716
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.830
HNRNPR Sorex araneus ENSSARG00000001732 I 0.818
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.830
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.769
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.818
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.830
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.815
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.818
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.818
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.803
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.815
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.830
HNRNPR Homo sapiens ENSG00000125944 I 0.830
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.744
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.783
HNRNPR Equus caballus ENSECAG00000013733 I 0.830
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.825
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.830
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.814
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.825
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.818
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.731
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.830
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.726
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.723
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.731
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.731
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.731
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.736
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.731
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.731
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.731
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.709
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.703
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.721
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.731
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.726
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.709
SYNCRIP Homo sapiens ENSG00000135316 I 0.731
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.731
Syncrip Dipodomys ordii ENSDORG00000005217 I 0.860
SYNCRIP Dasypus novemcinctus ENSDNOG00000018345 I 0.836
syncrip Danio rerio ENSDARG00000040184 I 0.721
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.731
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.731
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.731
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.731
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.731
SYNCRIP Otolemur garnettii ENSOGAG00000001721 I 0.860
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.731
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.726
Syncrip Mus musculus ENSMUSG00000032423 I 0.736
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.731
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.731
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.731
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.721
syncripl Danio rerio ENSDARG00000026723 I 0.704
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.731
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.731
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.731