cassava45236.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava45236.m1 T49425_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava45236.m1 RRM 140 207
cassava45236.m1 RRM 237 287

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29485.m000140 Ricinus communis 29485.m000140 N 0.723
30068.m002593 Ricinus communis 30068.m002593 N 0.796
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.730
B9GIT2_POPTR Populus trichocarpa POPTR_0001s45290 N 0.833
B9IDI5_POPTR Populus trichocarpa POPTR_0015s00770 N 0.800
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.745
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.715
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.715
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.715
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.715
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.715
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.715
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.715
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.715
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.796
chr3.LjT02L14.110.nd Lotus japonicus chr3.LjT02L14.110.nd N 0.790
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.730
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.701
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.752
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.752
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.701
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.715
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.701
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.737
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.745
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.752
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.752
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.715
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.715
LjT41H24.20.nd Lotus japonicus LjT41H24.20.nd N 0.732
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.715
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.745
MDP0000155814 Malus x domestica MDP0000155814 N 0.748
MDP0000233630 Malus x domestica MDP0000233630 N 0.715
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.701
mgf012896m Mimulus guttatus mgf012896m N 0.723
mgf013366m Mimulus guttatus mgf013366m N 0.723
PDK_20s1621251g001 Phoenix dactylifera PDK_20s1621251g001 N 0.731
PK04894.1 Cannabis sativa PK04894.1 N 0.723
PK12463.1 Cannabis sativa PK12463.1 N 0.766
POPTR_0012s02890 Populus trichocarpa POPTR_0012s02890 N 0.790
ppa006808m Prunus persica ppa006808m N 0.715
SB07G001560 Sorghum bicolor Sb07g001560 N 0.745
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.737
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.730