MDP0000123673 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000123673 T57311_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000123673 RRM 18 85
MDP0000123673 RRM 179 248
MDP0000123673 RRM 422 492

Links

Other RRM family RBPs
Other Malus x domestica RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29647.m002041 Ricinus communis 29647.m002041 N 0.900
AT1G03457 Arabidopsis thaliana AT1G03457-TAIR-G N 0.735
AtRBP-DR1 Arabidopsis thaliana AT4G03110-TAIR-G N 0.789
B9GTC1_POPTR Populus trichocarpa POPTR_0002s22730 N 0.853
B9I9Y4_POPTR Populus trichocarpa POPTR_0014s13070 N 0.863
BGIOSIBCE018791 Oryza indica BGIOSIBCE018791 N 0.756
BRADI2G27260 Brachypodium distachyon BRADI2G27260 N 0.784
BRADI2G60300 Brachypodium distachyon BRADI2G60300 N 0.793
cassava24659.valid.m1 Manihot esculenta cassava24659.valid.m1 N 0.896
cassava29564.valid.m1 Manihot esculenta cassava29564.valid.m1 N 0.891
Cucsa.084710 Cucumis sativus Cucsa.084710 N 0.858
Glyma02g17090.1 Glycine max Glyma02g17090.1 N 0.834
Glyma03g36650.1 Glycine max Glyma03g36650.1 N 0.905
Glyma10g02700.1 Glycine max Glyma10g02700.1 N 0.853
Glyma19g39300.1 Glycine max Glyma19g39300.1 N 0.900
GRMZM2G005459 Zea mays GRMZM2G005459 N 0.788
GRMZM2G177001 Zea mays GRMZM2G177001 N 0.765
GSVIVG00011013001 Vitis vinifera GSVIVG00011013001 N 0.896
LOC_Os01g71200 Oryza sativa LOC_Os01g71200 N 0.789
LOC_Os05g30980 Oryza sativa LOC_Os05g30980 N 0.779
MDP0000138865 Malus x domestica MDP0000138865 N 0.934
mgf007780m Mimulus guttatus mgf007780m N 0.825
mgf010250m Mimulus guttatus mgf010250m N 0.736
PK12631.1 Cannabis sativa PK12631.1 N 0.872
ppa006027m Prunus persica ppa006027m N 0.900
Sb03g045340 Sorghum bicolor Sb03g045340 N 0.803
SB09G018610 Sorghum bicolor Sb09g018610 N 0.770
XM_002872750.1 Arabidopsis lyrata fgenesh2_kg.6__3385__AT4G03110.1 N 0.788
XM_002892115.1 Arabidopsis lyrata fgenesh2_kg.1__275__AT1G03457.2 N 0.749