CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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amel4_ncbi_hmm10964
(
Apis mellifera
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
amel4_ncbi_hmm10964
T01788_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ZFP36
M267_0.6
Homo sapiens
Sequence logo not available
UUAUUUAUU
RIP-chip
Cook et al.(2011)
194_18256032
0.741
ZFP36
M266_0.6
Homo sapiens
Sequence logo not available
UUGUGS
RIP-chip
Cook et al.(2011)
193_18367721.3
0.741
ZFP36
M265_0.6
Homo sapiens
Sequence logo not available
CUUGU
RIP-chip
Cook et al.(2011)
193_18367721.2
0.741
ZFP36
M264_0.6
Homo sapiens
Sequence logo not available
HCYUBY
RIP-chip
Cook et al.(2011)
193_18367721.1
0.741
ZFP36
M263_0.6
Homo sapiens
Sequence logo not available
AAUAA
RIP-chip
Cook et al.(2011)
193_18367721
0.741
ZFP36
M350_0.6
Homo sapiens
UUAUUUAWW
SELEX
Cook et al.(2011)
951_12324455
0.741
ZFP36
M269_0.6
Homo sapiens
UUAUUUAWW
SELEX
Cook et al.(2011)
221_12324455
0.741
ZFP36
M268_0.6
Homo sapiens
Sequence logo not available
AUUUA
RIP-chip
Cook et al.(2011)
194_18256032.1
0.741
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
amel4_ncbi_hmm10964
CCCH ZF
80
106
YKTELCRPFEESGTCKYGDKCQFAHGY
amel4_ncbi_hmm10964
CCCH ZF
118
144
YKTELCRTFHTIGFCPYGPRCHFIHNF
Links
Other
CCCH ZF
family RBPs
Other
Apis mellifera
RBPs
165 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ARB_04665
Arthroderma benhamiae
ARB_04665
N
0.000
fgenesh1_pm.00868_#_106
Aspergillus carbonarius
fgenesh1_pm.00868_#_106
N
0.000
ACLA_065300
Aspergillus clavatus
CADACLAG00006222
N
0.000
AFLA_071390
Aspergillus flavus
CADAFLAG00008563
N
0.000
AFUA_7G02230
Aspergillus fumigatus
CADAFUAG00001190
N
0.000
ANIA_09090
Aspergillus nidulans
CADANIAG00009524
N
0.000
An12g00410
Aspergillus niger
CADANGAG00009490
N
0.000
AO090038000602
Aspergillus oryzae
CADAORAG00009349
N
0.000
BDBG_04017
Blastomyces dermatitidis
BDBG_04017
N
0.000
BC1G_12954
Botrytis cinerea
BC1G_12954
N
0.000
CIMG_07756
Coccidioides immitis
CIMG_07756
N
0.000
CPSG_09340
Coccidioides posadasii
CPSG_09340
N
0.000
estExt_Genewise1.C_280098
Cochliobolus heterostrophus C5
estExt_Genewise1.C_280098
N
0.000
estExt_Genewise1Plus.C_61164
Cryphonectria parasitica
estExt_Genewise1Plus.C_61164
N
0.000
FGSG_05737
Fusarium graminearum
FGSG_05737
N
0.000
HCAG_04410
Histoplasma capsulatum
HCAG_04410
N
0.000
MGG_08741
Magnaporthe oryzae
MGG_08741
N
0.000
MGYG_05892
Microsporum gypseum
MGYG_05892
N
0.000
estExt_Genewise1Plus.C_chr_10431
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_10431
N
0.000
estExt_Genewise1Plus.C_sca_18_chr2_1_00442
Nectria haematococca
estExt_Genewise1Plus.C_sca_18_chr2_1_00442
N
0.000
NFIA_114950
Neosartorya fischeri
CADNFIAG00010593
N
0.000
NCU00768
Neurospora crassa
NCU00768
N
0.000
estExt_fgenesh2_pg.C_40625
Neurospora discreta
estExt_fgenesh2_pg.C_40625
N
0.000
estExt_fgenesh1_pm.C_520029
Neurospora tetrasperma
estExt_fgenesh1_pm.C_520029
N
0.000
PABG_01162
Paracoccidioides brasiliensis
PABG_01162
N
0.000
Pc21g11890
Penicillium chrysogenum
Pc21g11890
N
0.000
PMAA_010670
Penicillium marneffei
PMAA_010670
N
0.000
EAT81253.1
Phaeosphaeria nodorum
EAT81253.1
N
0.000
PredSwiss_CON474.2
Pneumocystis carinii
PredSwiss_CON474.2
N
0.000
PredSwiss_ASS2010_2387.1
Pneumocystis carinii
PredSwiss_ASS2010_2387.1
N
0.000
Pa_1_5920
Podospora anserina
Pa_1_5920
N
0.000
PTRG_04758
Pyrenophora tritici repentis
PTRG_04758
N
0.000
SPBC23E6.01c
Schizosaccharomyces pombe
SPBC23E6.01c
N
0.000
SNOG_11545
Stagonospora nodorum
SNOG_11545
N
0.000
estExt_Genewise1.C_80620
Trichoderma atroviride
estExt_Genewise1.C_80620
N
0.000
e_gw1.3.851.1
Trichoderma reesei
e_gw1.3.851.1
N
0.000
gw1.13.164.1
Trichoderma virens
gw1.13.164.1
N
0.000
GSTUMT00001670001
Tuber melanosporum
GSTUMT00001670001
N
0.000
UREG_02108
Uncinocarpus reesii
UREG_02108
N
0.000
VDBG_02406
Verticillium albo atrum
VDBG_02406
N
0.000
VDAG_02878
Verticillium dahliae
VDAG_02878
N
0.000