amel4_ncbi_hmm10964 (Apis mellifera)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 amel4_ncbi_hmm10964 T01788_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.741
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.741
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.741
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.741
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.741
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.741
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.741
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.741
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
amel4_ncbi_hmm10964 CCCH ZF 80 106
amel4_ncbi_hmm10964 CCCH ZF 118 144

Links

Other CCCH ZF family RBPs
Other Apis mellifera RBPs

165 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL002308 Aedes aegypti AAEL002308 I 0.870
e_gw1.1.2331.1 Agaricus bisporus e_gw1.1.2331.1 N 0.704
Ame_R016002 Ailuropoda melanoleuca Ame_R016002 I 0.741
Ame_R004924 Ailuropoda melanoleuca Ame_R004924 I 0.926
Ame_R000168 Ailuropoda melanoleuca Ame_R000168 I 0.944
AMAG_06814 Allomyces macrogynus AMAG_06814 N 0.722
AMAG_15989 Allomyces macrogynus AMAG_15989 N 0.722
Aqu1.221345 Amphimedon queenslandica Aqu1.221345 I 0.759
ENSACAG00000009252 Anolis carolinensis ENSACAG00000009252 I 0.722
ZFP36L2 Anolis carolinensis ENSACAG00000014740 I 0.926
ENSACAG00000005547 Anolis carolinensis ENSACAG00000005547 I 0.926
AGAP010954 Anopheles gambiae AGAP010954 N 0.852
BGIBMGA008337 Bombyx mori BGIBMGA008337 I 0.870
A7MB98_BOVIN Bos taurus ENSBTAG00000025434 I 0.926
Q1JP65_BOVIN Bos taurus ENSBTAG00000003553 I 0.944
estExt_fgenesh2_pg.C_680108 Branchiostoma floridae estExt_fgenesh2_pg.C_680108 I 0.926
LOC100405281 Callithrix jacchus ENSCJAG00000015116 I 0.926
LOC100386590 Callithrix jacchus ENSCJAG00000014571 I 0.944
LOC100397247 Callithrix jacchus ENSCJAG00000014156 I 0.741
ZFP36L1 Canis familiaris ENSCAFG00000016497 I 0.926
ZFP36L2 Canis familiaris ENSCAFG00000002438 I 0.944
gw1.534.24.1 Capitella teleta gw1.534.24.1 I 0.870
ZFP36 Cavia porcellus ENSCPOG00000011363 I 0.741
ZFP36L2 Cavia porcellus ENSCPOG00000022038 I 0.926
ZFP36L1 Cavia porcellus ENSCPOG00000025078 I 0.926
fgeneshCV_pg.C_scaffold_14000116 Chlorella vulgaris fgeneshCV_pg.C_scaffold_14000116 I 0.704
ZFP36L2 Choloepus hoffmanni ENSCHOG00000005595 N 0.796
Q4H2G7_CIOIN Ciona intestinalis ENSCING00000014446 I 0.889
ENSCSAVG00000002923 Ciona savignyi ENSCSAVG00000002923 I 0.889
CC1G_04402 Coprinopsis cinerea CC1G_04402 N 0.704
CpipJ_CPIJ018734 Culex pipiens CpipJ_CPIJ018734 I 0.870
CPIJ018734 Culex quinquefasciatus CPIJ018734 I 0.870
zfp36l1a Danio rerio ENSDARG00000016154 I 0.926
zfp36l1b Danio rerio ENSDARG00000021443 I 0.907
ZFP36 Danio rerio ENSDARG00000044395 I 0.722
zgc:114130 Danio rerio ENSDARG00000040725 I 0.796
CABZ01070258.1 Danio rerio ENSDARG00000040503 I 0.889
zfp36l2 Danio rerio ENSDARG00000021806 I 0.907
gw1.42.93.1 Daphnia pulex gw1.42.93.1 N 0.907
ZFP36L1 Dasypus novemcinctus ENSDNOG00000005159 I 0.926
DDB_G0285973 Dictyostelium discoideum DDB_G0285973 I 0.704
Zfp36l1 Dipodomys ordii ENSDORG00000008348 I 0.926
Zfp36 Dipodomys ordii ENSDORG00000013487 I 0.722
GF21384 Drosophila ananassae FBgn0098386 N 0.833
GG17735 Drosophila erecta FBgn0109957 N 0.833
GH17894 Drosophila grimshawi FBgn0125362 N 0.833
Tis11 Drosophila melanogaster FBgn0011837 N 0.833
GI21684 Drosophila mojavensis FBgn0144414 N 0.815
GL13141 Drosophila persimilis FBgn0150747 N 0.833
GA17935-RA Drosophila pseudoobscura FBgn0077944 N 0.833
GM11580 Drosophila sechellia FBgn0166523 N 0.833
GJ15863 Drosophila virilis FBgn0203050 N 0.833
GK25600 Drosophila willistoni FBgn0227559 N 0.833
GE17025 Drosophila yakuba FBgn0234511 N 0.833
EDI_287240 Entamoeba dispar EDI_287240 N 0.704
EHI_008770 Entamoeba histolytica EHI_008770 N 0.704
LOC100063597 Equus caballus ENSECAG00000018860 I 0.926
ZFP36L2 Felis catus ENSFCAG00000013462 N 0.889
ENSGACG00000013400 Gasterosteus aculeatus ENSGACG00000013400 I 0.889
ENSGACG00000008351 Gasterosteus aculeatus ENSGACG00000008351 I 0.741
ZFP36L1 Gasterosteus aculeatus ENSGACG00000011271 I 0.926
ZFP36 Gasterosteus aculeatus ENSGACG00000008344 I 0.833
ZFP36 Gorilla gorilla ENSGGOG00000014399 I 0.741
ZFP36L2 Gorilla gorilla ENSGGOG00000001402 I 0.944
138584 Helobdella robusta 138584 N 0.704
153596 Helobdella robusta 153596 N 0.741
64152 Helobdella robusta 64152 N 0.815
ZFP36 Homo sapiens ENSG00000128016 D 0.741
ZFP36L2 Homo sapiens ENSG00000152518 I 0.944
ZFP36L1 Homo sapiens ENSG00000185650 I 0.926
XP_002159721.1 Hydra magnipapillata XP_002159721.1 N 0.907
estExt_fgenesh2_pg.C_10793 Laccaria bicolor estExt_fgenesh2_pg.C_10793 N 0.722
gw1.30.59.1 Lottia gigantea gw1.30.59.1 N 0.889
ZFP36L1 Loxodonta africana ENSLAFG00000028594 I 0.926
ZFP36L2 Loxodonta africana ENSLAFG00000004265 I 0.944
ZFP36L1 Macropus eugenii ENSMEUG00000003070 I 0.926
ZFP36 Macropus eugenii ENSMEUG00000010317 I 0.741
ZFP36L2 Macropus eugenii ENSMEUG00000010649 I 0.944
ZFP36L2 Microcebus murinus ENSMICG00000010318 I 0.944
gw1.1.1133.1 Micromonas pusilla gw1.1.1133.1 N 0.704
ZFP36L2 Monodelphis domestica ENSMODG00000000407 I 0.944
ZFP36 Monodelphis domestica ENSMODG00000013494 I 0.722
fgenesh2_pg.scaffold_13000206 Monosiga brevicollis fgenesh2_pg.scaffold_13000206 N 0.741
Zfp36l3 Mus musculus ENSMUSG00000059334 I 0.870
Zfp36l2 Mus musculus ENSMUSG00000045817 I 0.944
Zfp36 Mus musculus ENSMUSG00000044786 I 0.722
Zfp36l1 Mus musculus ENSMUSG00000021127 I 0.926
ZFP36L2 Myotis lucifugus ENSMLUG00000015588 I 0.944
ZFP36 Myotis lucifugus ENSMLUG00000002942 I 0.741
nasonia_NCBI_hmm9264 Nasonia vitripennis nasonia_NCBI_hmm9264 I 0.944
e_gw.346.37.1 Nematostella vectensis e_gw.346.37.1 I 0.981
ZFP36L2 Ornithorhynchus anatinus ENSOANG00000002848 I 0.944
ZFP36 Oryctolagus cuniculus ENSOCUG00000003400 I 0.741
ZFP36L1 Oryctolagus cuniculus ENSOCUG00000003168 I 0.926
ENSORLG00000000589 Oryzias latipes ENSORLG00000000589 I 0.852
ENSORLG00000008378 Oryzias latipes ENSORLG00000008378 I 0.759
ZFP36L1 Oryzias latipes ENSORLG00000011106 I 0.926
gwEuk.3.753.1 Ostreococcus lucimarinus gwEuk.3.753.1 I 0.722
gw1.3.668.1 Ostreococcus RCC809 gw1.3.668.1 I 0.722
0300010273 Ostreococcus tauri 0300010273 I 0.741
ZFP36L1 Otolemur garnettii ENSOGAG00000010033 N 0.764
XR_022888.1 Pan troglodytes ENSPTRG00000030712 I 0.926
ZFP36L2 Pan troglodytes ENSPTRG00000011870 I 0.944
ZFP36 Pan troglodytes ENSPTRG00000010968 I 0.741
fgenesh1_pg.C_scaffold_11000103 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_11000103 N 0.704
estExt_genemark.C_30534 Pleurotus ostreatus estExt_genemark.C_30534 N 0.704
EFA80829.1 Polysphondylium pallidum EFA80829.1 I 0.722
ENSPPYG00000010577 Pongo pygmaeus ENSPPYG00000010577 I 0.741
ENSPPYG00000012458 Pongo pygmaeus ENSPPYG00000012458 I 0.944
ENSPPYG00000005933 Pongo pygmaeus ENSPPYG00000005933 I 0.926
estExt_fgenesh3_pg.C_770054 Postia placenta estExt_fgenesh3_pg.C_770054 N 0.722
ZFP36L1 Procavia capensis ENSPCAG00000005383 I 0.926
ZFP36L2 Procavia capensis ENSPCAG00000010765 I 0.926
ZFP36 Pteropus vampyrus ENSPVAG00000011124 I 0.741
ZFP36L1 Pteropus vampyrus ENSPVAG00000011686 I 0.926
Zfp36l3 Rattus norvegicus ENSRNOG00000029788 I 0.852
Zfp36 Rattus norvegicus ENSRNOG00000019673 I 0.722
Zfp36l2 Rattus norvegicus ENSRNOG00000005067 I 0.944
TISB_RAT Rattus norvegicus ENSRNOG00000030024 I 0.926
PTSG_01604 Salpingoeca rosetta PTSG_01604 N 0.759
estExt_fgenesh1_pm.C_10824 Schizophyllum commune estExt_fgenesh1_pm.C_10824 N 0.722
fgenesh2_pg.C_scaffold_32000041 Selaginella moellendorfii fgenesh2_pg.C_scaffold_32000041 N 0.704
e_gw1.45.79.1 Selaginella moellendorfii e_gw1.45.79.1 N 0.704
estExt_fgenesh2_kg.C_10578 Serpula lacrymans estExt_fgenesh2_kg.C_10578 N 0.704
ZFP36L1 Spermophilus tridecemlineatus ENSSTOG00000009758 I 0.926
fgenesh1_pg.C_scaffold_4000193 Sporobolomyces roseus fgenesh1_pg.C_scaffold_4000193 N 0.704
XP_001175665.1 Strongylocentrotus purpuratus XP_001175665.1 I 0.907
XP_001175810.1 Strongylocentrotus purpuratus XP_001175810.1 I 0.907
XP_001178437.1 Strongylocentrotus purpuratus XP_001178437.1 I 0.907
XP_782811.1 Strongylocentrotus purpuratus XP_782811.1 I 0.907
ZFP36 Sus scrofa ENSSSCG00000010708 I 0.741
ENSSSCG00000008460 Sus scrofa ENSSSCG00000008460 I 0.944
ZFP36L2 Sus scrofa ENSSSCG00000008461 I 0.944
ZFP36L1 Sus scrofa ENSSSCG00000002302 I 0.926
ZFP36L1 Taeniopygia guttata ENSTGUG00000011494 I 0.907
ZFP36L2 Takifugu rubripes ENSTRUG00000006923 I 0.907
ENSTRUG00000003178 Takifugu rubripes ENSTRUG00000003178 I 0.870
ZFP36L1 Takifugu rubripes ENSTRUG00000012295 I 0.926
ZFP36 Takifugu rubripes ENSTRUG00000002023 I 0.833
ZFP36L1 Tarsius syrichta ENSTSYG00000009284 I 0.926
ZFP36 Tetraodon nigroviridis ENSTNIG00000000183 I 0.759
ZFP36L2 Tetraodon nigroviridis ENSTNIG00000017103 I 0.907
ENSTNIG00000019802 Tetraodon nigroviridis ENSTNIG00000019802 I 0.889
ZFP36L1 Tetraodon nigroviridis ENSTNIG00000002277 I 0.907
e_gw1.40.110.1 Trichoplax adhaerens e_gw1.40.110.1 I 0.944
ZFP36 Tupaia belangeri ENSTBEG00000005948 I 0.741
ZFP36L2 Tupaia belangeri ENSTBEG00000012370 I 0.944
ZFP36L2 Tursiops truncatus ENSTTRG00000006356 I 0.944
ZFP36L1 Tursiops truncatus ENSTTRG00000003475 I 0.926
ZFP36 Tursiops truncatus ENSTTRG00000003564 I 0.741
AAH84197 Xenopus laevis AAH84197 I 0.926
AAH84221 Xenopus laevis AAH84221 I 0.907
AAI00163 Xenopus laevis AAI00163 I 0.926
AAI08849 Xenopus laevis AAI08849 I 0.722
BAC54909 Xenopus laevis BAC54909 I 0.907
Q7ZXW9 Xenopus laevis Q7ZXW9 I 0.926
AAH82435 Xenopus laevis AAH82435 I 0.722
AAH44086 Xenopus laevis AAH44086 I 0.926
AAD24209 Xenopus laevis AAD24209 I 0.907
AAD24208 Xenopus laevis AAD24208 I 0.926
AAD24207 Xenopus laevis AAD24207 I 0.722
Q805B4 Xenopus laevis Q805B4 I 0.907
zfp36l2 Xenopus tropicalis ENSXETG00000009274 I 0.926
zfp36 Xenopus tropicalis ENSXETG00000002899 I 0.704
zfp36l1 Xenopus tropicalis ENSXETG00000016987 I 0.926