amel4_ncbi_hmm10964 (Apis mellifera)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 amel4_ncbi_hmm10964 T01788_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.741
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.741
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.741
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.741
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.741
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.741
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.741
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.741
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
amel4_ncbi_hmm10964 CCCH ZF 80 106
amel4_ncbi_hmm10964 CCCH ZF 118 144

Links

Other CCCH ZF family RBPs
Other Apis mellifera RBPs

165 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ARB_04665 Arthroderma benhamiae ARB_04665 N 0.000
fgenesh1_pm.00868_#_106 Aspergillus carbonarius fgenesh1_pm.00868_#_106 N 0.000
ACLA_065300 Aspergillus clavatus CADACLAG00006222 N 0.000
AFLA_071390 Aspergillus flavus CADAFLAG00008563 N 0.000
AFUA_7G02230 Aspergillus fumigatus CADAFUAG00001190 N 0.000
ANIA_09090 Aspergillus nidulans CADANIAG00009524 N 0.000
An12g00410 Aspergillus niger CADANGAG00009490 N 0.000
AO090038000602 Aspergillus oryzae CADAORAG00009349 N 0.000
BDBG_04017 Blastomyces dermatitidis BDBG_04017 N 0.000
BC1G_12954 Botrytis cinerea BC1G_12954 N 0.000
CIMG_07756 Coccidioides immitis CIMG_07756 N 0.000
CPSG_09340 Coccidioides posadasii CPSG_09340 N 0.000
estExt_Genewise1.C_280098 Cochliobolus heterostrophus C5 estExt_Genewise1.C_280098 N 0.000
estExt_Genewise1Plus.C_61164 Cryphonectria parasitica estExt_Genewise1Plus.C_61164 N 0.000
FGSG_05737 Fusarium graminearum FGSG_05737 N 0.000
HCAG_04410 Histoplasma capsulatum HCAG_04410 N 0.000
MGG_08741 Magnaporthe oryzae MGG_08741 N 0.000
MGYG_05892 Microsporum gypseum MGYG_05892 N 0.000
estExt_Genewise1Plus.C_chr_10431 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_10431 N 0.000
estExt_Genewise1Plus.C_sca_18_chr2_1_00442 Nectria haematococca estExt_Genewise1Plus.C_sca_18_chr2_1_00442 N 0.000
NFIA_114950 Neosartorya fischeri CADNFIAG00010593 N 0.000
NCU00768 Neurospora crassa NCU00768 N 0.000
estExt_fgenesh2_pg.C_40625 Neurospora discreta estExt_fgenesh2_pg.C_40625 N 0.000
estExt_fgenesh1_pm.C_520029 Neurospora tetrasperma estExt_fgenesh1_pm.C_520029 N 0.000
PABG_01162 Paracoccidioides brasiliensis PABG_01162 N 0.000
Pc21g11890 Penicillium chrysogenum Pc21g11890 N 0.000
PMAA_010670 Penicillium marneffei PMAA_010670 N 0.000
EAT81253.1 Phaeosphaeria nodorum EAT81253.1 N 0.000
PredSwiss_CON474.2 Pneumocystis carinii PredSwiss_CON474.2 N 0.000
PredSwiss_ASS2010_2387.1 Pneumocystis carinii PredSwiss_ASS2010_2387.1 N 0.000
Pa_1_5920 Podospora anserina Pa_1_5920 N 0.000
PTRG_04758 Pyrenophora tritici repentis PTRG_04758 N 0.000
SPBC23E6.01c Schizosaccharomyces pombe SPBC23E6.01c N 0.000
SNOG_11545 Stagonospora nodorum SNOG_11545 N 0.000
estExt_Genewise1.C_80620 Trichoderma atroviride estExt_Genewise1.C_80620 N 0.000
e_gw1.3.851.1 Trichoderma reesei e_gw1.3.851.1 N 0.000
gw1.13.164.1 Trichoderma virens gw1.13.164.1 N 0.000
GSTUMT00001670001 Tuber melanosporum GSTUMT00001670001 N 0.000
UREG_02108 Uncinocarpus reesii UREG_02108 N 0.000
VDBG_02406 Verticillium albo atrum VDBG_02406 N 0.000
VDAG_02878 Verticillium dahliae VDAG_02878 N 0.000