lin28a (Danio rerio)
CCHC ZF,CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00313 (CSD) 		IPR001878
IPR002059 		ENSDARG00000016999 T06776_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
LIN28A
M153_0.6 		Homo sapiens YGGAGGR RNAcompete
Ray et al.(2013)
RNCMPT00162 		0.827
LIN28A
M035_0.6 		Homo sapiens HGGAGWA RNAcompete
Ray et al.(2013)
RNCMPT00036 		0.827
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000019558 CSD 33 106
ENSDARP00000019558 CCHC ZF 129 145
ENSDARP00000019558 CCHC ZF 151 168
ENSDARP00000089741 CSD 27 100
ENSDARP00000089741 CCHC ZF 123 139
ENSDARP00000089741 CCHC ZF 145 162
ENSDARP00000101140 CSD 38 102

Links

Other CCHC ZF,CSD family RBPs
Other Danio rerio RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002892115.1 Arabidopsis lyrata fgenesh2_kg.1__275__AT1G03457.2 N 0.000
XM_002872750.1 Arabidopsis lyrata fgenesh2_kg.6__3385__AT4G03110.1 N 0.000
AtRBP-DR1 Arabidopsis thaliana AT4G03110-TAIR-G N 0.000
BRADI2G27260 Brachypodium distachyon BRADI2G27260 N 0.000
BRADI2G60300 Brachypodium distachyon BRADI2G60300 N 0.000
PK12631.1 Cannabis sativa PK12631.1 N 0.000
Cucsa.084710 Cucumis sativus Cucsa.084710 N 0.000
Glyma03g36650.1 Glycine max Glyma03g36650.1 N 0.000
Glyma02g17090.1 Glycine max Glyma02g17090.1 N 0.000
Glyma19g39300.1 Glycine max Glyma19g39300.1 N 0.000
Glyma10g02700.1 Glycine max Glyma10g02700.1 N 0.000
MDP0000123673 Malus x domestica MDP0000123673 N 0.000
MDP0000138865 Malus x domestica MDP0000138865 N 0.000
cassava29564.valid.m1 Manihot esculenta cassava29564.valid.m1 N 0.000
cassava24659.valid.m1 Manihot esculenta cassava24659.valid.m1 N 0.000
mgf007780m Mimulus guttatus mgf007780m N 0.000
BGIOSIBCE018791 Oryza indica BGIOSIBCE018791 N 0.000
LOC_Os05g30980 Oryza sativa LOC_Os05g30980 N 0.000
LOC_Os01g71200 Oryza sativa LOC_Os01g71200 N 0.000
B9I9Y4_POPTR Populus trichocarpa POPTR_0014s13070 N 0.000
B9GTC1_POPTR Populus trichocarpa POPTR_0002s22730 N 0.000
ppa006027m Prunus persica ppa006027m N 0.000
29647.m002041 Ricinus communis 29647.m002041 N 0.000
SB09G018610 Sorghum bicolor Sb09g018610 N 0.000
Sb03g045340 Sorghum bicolor Sb03g045340 N 0.000
GSVIVG00011013001 Vitis vinifera GSVIVG00011013001 N 0.000
GRMZM2G005459 Zea mays GRMZM2G005459 N 0.000
GRMZM2G177001 Zea mays GRMZM2G177001 N 0.000