B9N668_POPTR (Populus trichocarpa)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		POPTR_0006s28720 T07414_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s28720.1 RRM 4 63
POPTR_0006s28720.1 CCHC ZF 95 112
POPTR_0006s28720.2 RRM 4 63
POPTR_0006s28720.2 CCHC ZF 95 112

Links

Other CCHC ZF,RRM family RBPs
Other Populus trichocarpa RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002869274.1 Arabidopsis lyrata fgenesh2_kg.7__1015__AT4G31580.1 N 0.846
XM_002878724.1 Arabidopsis lyrata fgenesh2_kg.4__375__AT2G24590.1 N 0.859
XM_002893265.1 Arabidopsis lyrata fgenesh2_kg.1__2600__AT1G23860.3 N 0.808
SRZ-21 Arabidopsis thaliana AT1G23860-TAIR-G N 0.795
RSZ22a Arabidopsis thaliana AT2G24590-TAIR-G N 0.859
SRZ-22 Arabidopsis thaliana AT4G31580-TAIR-G N 0.846
BRADI3G53760 Brachypodium distachyon BRADI3G53760 N 0.734
BRADI3G48460 Brachypodium distachyon BRADI3G48460 N 0.747
BRADI1G46980 Brachypodium distachyon BRADI1G46980 N 0.772
PK15383.1 Cannabis sativa PK15383.1 N 0.910
PK23390.1 Cannabis sativa PK23390.1 N 0.897
Cucsa.285940 Cucumis sativus Cucsa.285940 N 0.872
Cucsa.311100 Cucumis sativus Cucsa.311100 N 0.949
Glyma08g39830.1 Glycine max Glyma08g39830.1 N 0.885
Glyma14g17930.1 Glycine max Glyma14g17930.1 N 0.923
Glyma17g29080.1 Glycine max Glyma17g29080.1 N 0.923
Glyma18g18860.1 Glycine max Glyma18g18860.1 N 0.872
LjSGA_021019.1 Lotus japonicus LjSGA_021019.1 N 0.897
MDP0000256723 Malus x domestica MDP0000256723 N 0.833
MDP0000870155 Malus x domestica MDP0000870155 N 0.859
cassava18359.valid.m1 Manihot esculenta cassava18359.valid.m1 N 0.974
cassava8058.valid.m1 Manihot esculenta cassava8058.valid.m1 N 0.987
cassava38162.valid.m1 Manihot esculenta cassava38162.valid.m1 N 0.885
cassava37340.valid.m1 Manihot esculenta cassava37340.valid.m1 N 0.846
Medtr1g010600 Medicago truncatula Medtr1g010600 N 0.923
Medtr3g133170 Medicago truncatula Medtr3g133170 N 0.859
mgf005494m Mimulus guttatus mgf005494m N 0.885
mgf014721m Mimulus guttatus mgf014721m N 0.885
BGIOSIBCE008925 Oryza indica BGIOSIBCE008925 N 0.747
BGIOSIBCE020929 Oryza indica BGIOSIBCE020929 N 0.785
LOC_Os02g39720 Oryza sativa LOC_Os02g39720 N 0.785
LOC_Os02g54770 Oryza sativa LOC_Os02g54770 N 0.759
LOC_Os06g08840 Oryza sativa LOC_Os06g08840 N 0.785
PDK_20s1302151g001 Phoenix dactylifera PDK_20s1302151g001 N 0.846
e_gw1.332.33.1 Physcomitrella patens e_gw1.332.33.1 N 0.734
e_gw1.207.127.1 Physcomitrella patens e_gw1.207.127.1 N 0.734
B9ILD8_POPTR Populus trichocarpa POPTR_0018s03390 N 0.962
ppa012111m Prunus persica ppa012111m N 0.859
ppa012147m Prunus persica ppa012147m N 0.897
29848.m004475 Ricinus communis 29848.m004475 N 0.974
28610.m000073 Ricinus communis 28610.m000073 N 0.872
gw1.3.1555.1 Selaginella moellendorfii gw1.3.1555.1 N 0.795
SB04G035540 Sorghum bicolor Sb04g035540 N 0.759
SB10G005960 Sorghum bicolor Sb10g005960 N 0.785
Sb04g025670 Sorghum bicolor Sb04g025670 N 0.797
GSVIVG00033172001 Vitis vinifera GSVIVG00033172001 N 0.936
GSVIVG00020220001 Vitis vinifera GSVIVG00020220001 N 0.859
GRMZM2G151923 Zea mays GRMZM2G151923 N 0.772
GRMZM2G070239 Zea mays GRMZM2G070239 N 0.759
GRMZM2G027105 Zea mays GRMZM2G027105 N 0.797
GRMZM2G080930 Zea mays GRMZM2G080930 N 0.747