CBP20 (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT5G44200-TAIR-G T32834_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT5G44200.1-P RRM 36 106
AT5G44200.2-P RRM 36 106

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

61 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.000
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.718
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.000
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.000
XM_002863560.1 Arabidopsis lyrata fgenesh2_kg.8__389__AT5G44200.2 N 1.000
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.000
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.718
BRADI3G48560 Brachypodium distachyon BRADI3G48560 N 0.901
Bm1_02935 Brugia malayi Bm1_02935 N 0.000
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.718
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.718
PK11911.1 Cannabis sativa PK11911.1 N 0.901
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.704
gw1.11.372.1 Chlorella vulgaris gw1.11.372.1 N 0.761
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.704
gw1.12.351.1 Coccomyxa C 169 gw1.12.351.1 N 0.761
Cucsa.174450 Cucumis sativus Cucsa.174450 N 0.930
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.704
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.704
NCBP2 Equus caballus ENSECAG00000016153 N 0.718
FVEG_07036 Fusarium verticillioides FVEG_07036 N 0.000
NCBP2 Gallus gallus ENSGALG00000006843 N 0.000
Glyma12g33400.1 Glycine max Glyma12g33400.1 N 0.915
Glyma13g37030.1 Glycine max Glyma13g37030.1 N 0.915
NCBP2 Homo sapiens ENSG00000114503 N 0.718
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.000
LOAG_03270 Loa loa LOAG_03270 N 0.704
chr3.CM0160.780.nd Lotus japonicus chr3.CM0160.780.nd N 0.915
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.718
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.718
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.704
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.704
MDP0000315402 Malus x domestica MDP0000315402 N 0.958
cassava43645.valid.m1 Manihot esculenta cassava43645.valid.m1 N 0.944
cassava43646.valid.m1 Manihot esculenta cassava43646.valid.m1 N 0.944
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.000
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.718
mgf009384m Mimulus guttatus mgf009384m N 0.789
mgf009822m Mimulus guttatus mgf009822m N 0.831
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.704
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.000
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.000
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.000
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.718
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.718
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.000
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.000
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 Nectria haematococca estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 N 0.000
estExt_gwp.C_920142 Nematostella vectensis estExt_gwp.C_920142 N 0.000
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.704
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.718
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.704
LOC_Os02g39890 Oryza sativa LOC_Os02g39890 N 0.873
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.718
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.718
PHUM535920 Pediculus humanus PHUM535920 N 0.000
PDK_20s1327431g003 Phoenix dactylifera PDK_20s1327431g003 N 0.915
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.000
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.732
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.718
B9MYE5_POPTR Populus trichocarpa POPTR_0017s04640 N 0.901
A9PIB0_POPTR Populus trichocarpa POPTR_0007s01170 N 0.930
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.704
ppa010346m Prunus persica ppa010346m N 0.958
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.718
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.718
29983.m003140 Ricinus communis 29983.m003140 N 0.972
e_gw1.80.70.1 Selaginella moellendorfii e_gw1.80.70.1 N 0.817
SB04G025800 Sorghum bicolor Sb04g025800 N 0.901
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.718
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.000
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.718
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.718
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.000
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.000
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.718
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.704
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.718
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.704
GRMZM2G034804 Zea mays GRMZM2G034804 N 0.901