CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ATEG_05852
(
Aspergillus terreus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADATEAG00002953
T33741_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CADANIAG00004740
M241_0.6
Aspergillus nidulans
UACUAMK
RNAcompete
Ray et al.(2013)
RNCMPT00287
0.972
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADATEAP00002953
RRM
224
294
LFVGNLAGEVTDDSLFKAFAKYSSVQKARVIRDKRTQKSKGYGFVSFSDGDDYFKAAREMQGKYIGSHPVL
Links
Other
RRM
family RBPs
Other
Aspergillus terreus
RBPs
50 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PCBP3
Canis familiaris
ENSCAFG00000011907
N
0.000
PCBP4
Danio rerio
ENSDARG00000024276
N
0.000
pcbp3
Danio rerio
ENSDARG00000054378
I
0.000
zgc:110045
Danio rerio
ENSDARG00000057141
N
0.000
Pcbp3
Dipodomys ordii
ENSDORG00000003640
N
0.000
LOC426023
Gallus gallus
ENSGALG00000013313
N
0.000
PCBP4
Homo sapiens
ENSG00000090097
I
0.000
ENSMGAG00000003191
Meleagris gallopavo
ENSMGAG00000003191
N
0.000
Pcbp3
Mus musculus
ENSMUSG00000001120
D
0.000
PCBP3
Ornithorhynchus anatinus
ENSOANG00000006265
N
0.000
PHUM522820
Pediculus humanus
PHUM522820
N
0.000
ENSPPYG00000011525
Pongo pygmaeus
ENSPPYG00000011525
N
0.000
ENSRNOG00000036988
Rattus norvegicus
ENSRNOG00000036988
N
0.000
Pcbp3
Rattus norvegicus
ENSRNOG00000001245
I
0.000
PCBP3
Spermophilus tridecemlineatus
ENSSTOG00000007178
N
0.000
PCBP4
Takifugu rubripes
ENSTRUG00000007426
I
0.000
PCBP3
Takifugu rubripes
ENSTRUG00000013604
I
0.000
ENSTRUG00000017789
Takifugu rubripes
ENSTRUG00000017789
I
0.000
PCBP3
Tarsius syrichta
ENSTSYG00000005254
N
0.000
ENSTNIG00000003546
Tetraodon nigroviridis
ENSTNIG00000003546
N
0.000
PCBP2
Vicugna pacos
ENSVPAG00000000406
N
0.000
AAH74333
Xenopus laevis
AAH74333
N
0.000
AAI33216
Xenopus laevis
AAI33216
N
0.000
pcbp1
Xenopus tropicalis
ENSXETG00000011483
N
0.000