ENSCJAG00000013031 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000013031 T35592_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.858
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.816
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.755
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000023920 RRM 163 235
ENSCJAP00000023920 RRM 248 322
ENSCJAP00000023920 RRM 343 405

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.882
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.751
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.742
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.873
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.882
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.751
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.882
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.751
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.751
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.883
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.751
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.882
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.878
syncripl Danio rerio ENSDARG00000026723 I 0.724
syncrip Danio rerio ENSDARG00000040184 I 0.751
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.751
HNRNPR Equus caballus ENSECAG00000013733 I 0.882
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.864
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.746
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.858
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.756
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.734
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.756
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.751
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.883
HNRNPR Homo sapiens ENSG00000125944 I 0.883
SYNCRIP Homo sapiens ENSG00000135316 I 0.751
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.882
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.751
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.751
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.882
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.722
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.746
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.858
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.751
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.751
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.877
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.751
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.882
Syncrip Mus musculus ENSMUSG00000032423 I 0.756
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.751
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.849
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.765
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.742
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.863
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.751
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.883
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.729
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.756
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.757
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.864
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.751
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.878
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.751
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.882
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.722
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.751
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.878
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.756
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.882
ENSRNOG00000033356 Rattus norvegicus ENSRNOG00000033356 I 0.737
HNRNPR Sorex araneus ENSSARG00000001732 I 0.878
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.751
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.751
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.858
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.748
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.724
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.748
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.751
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.751
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.724
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.738
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.878
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.808
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.751
AAH70529 Xenopus laevis AAH70529 I 0.756
AAI61702 Xenopus laevis AAI61702 I 0.807
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.816
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.746