HNRDL_CHICK (Gallus gallus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGALG00000023199 T37741_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPAB
M301_0.6 		Homo sapiens Sequence logo not available ACAAAGACAAA SELEX
Cook et al.(2011)
39_12419250 		0.721
HNRNPAB
M210_0.6 		Tetraodon nigroviridis WRGWUAG RNAcompete
Ray et al.(2013)
RNCMPT00245 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000018213 RRM 32 101
ENSGALP00000018213 RRM 117 186
ENSGALP00000037222 RRM 68 137
ENSGALP00000037222 RRM 153 222

Links

Other RRM family RBPs
Other Gallus gallus RBPs

124 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R012484 Ailuropoda melanoleuca Ame_R012484 I 0.729
Ame_R000243 Ailuropoda melanoleuca Ame_R000243 I 0.713
Ame_R000242 Ailuropoda melanoleuca Ame_R000242 I 0.993
HNRNPD Anolis carolinensis ENSACAG00000010342 I 0.713
HNRNPAB Anolis carolinensis ENSACAG00000016946 I 0.714
A4IF81_BOVIN Bos taurus ENSBTAG00000014804 I 0.993
Q3ZC44_BOVIN Bos taurus ENSBTAG00000013627 I 0.721
A5D9H5_BOVIN Bos taurus ENSBTAG00000013952 I 0.718
ENSCJAG00000032456 Callithrix jacchus ENSCJAG00000032456 I 0.707
LOC100397832 Callithrix jacchus ENSCJAG00000031195 I 0.713
LOC100412686 Callithrix jacchus ENSCJAG00000015197 I 0.993
LOC100400250 Callithrix jacchus ENSCJAG00000015165 I 0.718
LOC100404672 Callithrix jacchus ENSCJAG00000005154 I 0.979
HNRPDL Callithrix jacchus ENSCJAG00000004101 N 0.829
HNRNPAB Canis familiaris ENSCAFG00000000241 I 0.721
ENSCAFG00000005858 Canis familiaris ENSCAFG00000005858 N 0.936
ENSCAFG00000008940 Canis familiaris ENSCAFG00000008940 I 0.993
HNRNPD Canis familiaris ENSCAFG00000025045 I 0.718
HNRNPAB Cavia porcellus ENSCPOG00000025972 I 0.721
ENSCPOG00000015619 Cavia porcellus ENSCPOG00000015619 I 0.993
HNRNPD Choloepus hoffmanni ENSCHOG00000000045 I 0.706
ENSCHOG00000010831 Choloepus hoffmanni ENSCHOG00000010831 N 0.964
ENSCHOG00000003275 Choloepus hoffmanni ENSCHOG00000003275 N 0.943
ENSCHOG00000009204 Choloepus hoffmanni ENSCHOG00000009204 N 0.879
ENSCHOG00000002938 Choloepus hoffmanni ENSCHOG00000002938 N 0.957
ENSCHOG00000000160 Choloepus hoffmanni ENSCHOG00000000160 I 0.993
hnrnpd Danio rerio ENSDARG00000059246 I 0.704
hnrpdl Danio rerio ENSDARG00000003429 N 0.850
HNRNPAB Dasypus novemcinctus ENSDNOG00000013820 I 0.721
ENSDNOG00000003887 Dasypus novemcinctus ENSDNOG00000003887 I 0.993
ENSDORG00000000968 Dipodomys ordii ENSDORG00000000968 I 0.993
Hnrnpd Dipodomys ordii ENSDORG00000012507 I 0.706
HNRNPD Echinops telfairi ENSETEG00000016709 I 0.718
ENSECAG00000018242 Equus caballus ENSECAG00000018242 I 0.721
Q6X9Z3_HORSE Equus caballus ENSECAG00000022692 I 0.993
LOC100060733 Equus caballus ENSECAG00000009344 I 0.718
HNRPDL Erinaceus europaeus ENSEEUG00000004301 I 0.979
HNRNPD Erinaceus europaeus ENSEEUG00000007552 I 0.709
HNRPDL Felis catus ENSFCAG00000000455 N 0.943
Q90626_CHICK Gallus gallus ENSGALG00000014381 I 0.707
Q5ZIH1_CHICK Gallus gallus ENSGALG00000011184 I 0.720
HNRNPAB Gasterosteus aculeatus ENSGACG00000020830 I 0.721
HNRNPAB Gasterosteus aculeatus ENSGACG00000018116 I 0.707
HNRPDL Gorilla gorilla ENSGGOG00000003714 I 0.993
HNRNPAB Gorilla gorilla ENSGGOG00000011692 I 0.721
HNRNPD Gorilla gorilla ENSGGOG00000026760 I 0.718
HNRNPD Homo sapiens ENSG00000138668 I 0.718
HNRPDL Homo sapiens ENSG00000152795 I 0.993
HNRNPAB Homo sapiens ENSG00000197451 D 0.721
HNRNPD Loxodonta africana ENSLAFG00000016483 I 0.713
ENSLAFG00000008612 Loxodonta africana ENSLAFG00000008612 I 0.993
HNRNPAB Loxodonta africana ENSLAFG00000001189 I 0.721
HNRPDL Macaca mulatta ENSMMUG00000015777 I 0.993
HNRNPD Macaca mulatta ENSMMUG00000014030 I 0.718
HNRNPAB Macaca mulatta ENSMMUG00000003996 I 0.729
ENSMEUG00000011454 Macropus eugenii ENSMEUG00000011454 I 0.986
HNRPDL Macropus eugenii ENSMEUG00000010033 N 0.831
HNRNPAB Macropus eugenii ENSMEUG00000007909 I 0.700
HNRNPD Meleagris gallopavo ENSMGAG00000008051 I 0.720
HNRPDL Meleagris gallopavo ENSMGAG00000008033 I 1.000
HNRNPAB Meleagris gallopavo ENSMGAG00000007727 I 0.707
HNRPDL Microcebus murinus ENSMICG00000001445 I 0.993
HNRNPD Microcebus murinus ENSMICG00000010984 I 0.713
HNRNPAB Monodelphis domestica ENSMODG00000004217 I 0.700
ENSMODG00000011916 Monodelphis domestica ENSMODG00000011916 I 0.986
HNRNPD Monodelphis domestica ENSMODG00000011898 I 0.718
ENSMODG00000006825 Monodelphis domestica ENSMODG00000006825 I 0.957
Hnrnpd Mus musculus ENSMUSG00000000568 I 0.718
Hnrpdl Mus musculus ENSMUSG00000029328 I 0.993
HNRNPD Myotis lucifugus ENSMLUG00000010628 I 0.704
HNRPDL Myotis lucifugus ENSMLUG00000014452 I 0.979
HNRNPD Ochotona princeps ENSOPRG00000009336 I 0.718
HNRPDL Ochotona princeps ENSOPRG00000007178 I 0.993
HNRNPAB Ochotona princeps ENSOPRG00000002546 I 0.721
HNRNPAB Ornithorhynchus anatinus ENSOANG00000004998 I 0.700
HNRNPD Ornithorhynchus anatinus ENSOANG00000001932 I 0.720
HNRPDL Ornithorhynchus anatinus ENSOANG00000004651 I 0.993
HNRPDL Oryctolagus cuniculus ENSOCUG00000013805 I 0.993
HNRNPD Oryctolagus cuniculus ENSOCUG00000001357 I 0.713
HNRNPD Oryzias latipes ENSORLG00000001833 I 0.718
HNRNPAB Oryzias latipes ENSORLG00000005327 I 0.729
HNRPDL Otolemur garnettii ENSOGAG00000002501 N 0.957
HNRNPD Pan troglodytes ENSPTRG00000016215 I 0.718
HNRPDL Pan troglodytes ENSPTRG00000016217 I 0.993
XR_022913.1 Pan troglodytes ENSPTRG00000017601 I 0.721
ENSPPYG00000014885 Pongo pygmaeus ENSPPYG00000014885 I 0.718
ENSPPYG00000016107 Pongo pygmaeus ENSPPYG00000016107 I 0.709
ENSPPYG00000014886 Pongo pygmaeus ENSPPYG00000014886 I 0.993
HNRPDL Procavia capensis ENSPCAG00000011543 I 0.993
HNRNPAB Procavia capensis ENSPCAG00000006760 I 0.714
HNRNPAB Pteropus vampyrus ENSPVAG00000016742 I 0.700
HNRPDL Pteropus vampyrus ENSPVAG00000006816 N 0.821
HNRNPD Pteropus vampyrus ENSPVAG00000000003 I 0.718
D3ZN89_RAT Rattus norvegicus ENSRNOG00000002270 I 0.993
Hnrpd Rattus norvegicus ENSRNOG00000002292 I 0.711
HNRNPD Sorex araneus ENSSARG00000006883 I 0.709
HNRPDL Sorex araneus ENSSARG00000009961 N 0.729
HNRNPD Spermophilus tridecemlineatus ENSSTOG00000013970 I 0.718
HNRPDL Spermophilus tridecemlineatus ENSSTOG00000013979 I 0.993
ENSSSCG00000012473 Sus scrofa ENSSSCG00000012473 N 0.714
HNRPDL Taeniopygia guttata ENSTGUG00000002850 I 1.000
HNRNPD Taeniopygia guttata ENSTGUG00000002858 I 0.718
HNRNPAB Taeniopygia guttata ENSTGUG00000001168 I 0.707
HNRNPAB Takifugu rubripes ENSTRUG00000000612 I 0.736
HNRNPD Tarsius syrichta ENSTSYG00000010395 I 0.713
HNRNPD Tetraodon nigroviridis ENSTNIG00000013499 I 0.716
HNRNPAB Tetraodon nigroviridis ENSTNIG00000010512 D 0.721
HNRPDL Tupaia belangeri ENSTBEG00000002817 I 0.993
HNRNPD Tursiops truncatus ENSTTRG00000007592 I 0.718
HNRPDL Tursiops truncatus ENSTTRG00000001793 I 0.986
HNRNPD Vicugna pacos ENSVPAG00000004374 I 0.713
Q7ZX83 Xenopus laevis Q7ZX83 N 0.893
Q6NU14 Xenopus laevis Q6NU14 N 0.907
CBU92545 Xenopus laevis CBU92545 N 0.907
CBF67671 Xenopus laevis CBF67671 N 0.907
ABV54637 Xenopus laevis ABV54637 I 0.707
AAH74212 Xenopus laevis AAH74212 I 0.707
AAH68788 Xenopus laevis AAH68788 N 0.907
AAH45124 Xenopus laevis AAH45124 N 0.893
AAH43814 Xenopus laevis AAH43814 I 0.707
hnrpdl Xenopus tropicalis ENSXETG00000023026 I 0.914
hnrnpd Xenopus tropicalis ENSXETG00000012569 I 0.718
hnrnpab Xenopus tropicalis ENSXETG00000003836 I 0.721