CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
CELF5
(
Gorilla gorilla
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGGOG00000002078
T37758_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
bru-3
M117_0.6
Drosophila melanogaster
KUGKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00122
0.844
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000002047
RRM
22
91
LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKAGCAFVKFSSHTEAQAAIHALHGSQTMPGAS
ENSGGOP00000002047
RRM
289
359
LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Gorilla gorilla
RBPs
56 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100070669
Equus caballus
ENSECAG00000023932
N
0.000
SRSF6
Loxodonta africana
ENSLAFG00000006682
N
0.000
SRSF6
Macaca mulatta
ENSMMUG00000006742
N
0.000
SRSF6
Meleagris gallopavo
ENSMGAG00000000888
N
0.000
SRSF6
Monodelphis domestica
ENSMODG00000003107
I
0.000
SRSF6
Myotis lucifugus
ENSMLUG00000016618
N
0.000
SRSF6
Ochotona princeps
ENSOPRG00000002017
N
0.000
SRSF6
Ornithorhynchus anatinus
ENSOANG00000008955
N
0.000
XR_023431.1
Pan troglodytes
ENSPTRG00000013506
N
0.000
SRSF4
Sorex araneus
ENSSARG00000001277
N
0.000
SRSF6
Spermophilus tridecemlineatus
ENSSTOG00000010866
N
0.000
SRSF6
Tursiops truncatus
ENSTTRG00000015410
N
0.000