NCL (Meleagris gallopavo)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMGAG00000008147 T38392_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.701
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMGAP00000008350 RRM 288 356
ENSMGAP00000008350 RRM 378 444
ENSMGAP00000008350 RRM 468 534
ENSMGAP00000008350 RRM 560 627

Links

Other RRM family RBPs
Other Meleagris gallopavo RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.708
NCL Anolis carolinensis ENSACAG00000001006 N 0.745
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.705
NCL Bos taurus ENSBTAG00000016174 I 0.712
NCL Canis familiaris ENSCAFG00000011037 I 0.705
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.716
NUCL_CHICK Gallus gallus ENSGALG00000007705 I 0.985
NCL Gorilla gorilla ENSGGOG00000004300 I 0.701
NCL Homo sapiens ENSG00000115053 D 0.701
NCL Macaca mulatta ENSMMUG00000018094 I 0.701
NCL Macropus eugenii ENSMEUG00000012335 I 0.727
NCL Monodelphis domestica ENSMODG00000002470 I 0.720
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.716
NCL Pan troglodytes ENSPTRG00000013025 I 0.701
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.705
NCL Taeniopygia guttata ENSTGUG00000009782 N 0.815
NCL Tursiops truncatus ENSTTRG00000009094 I 0.708