NCL (Pteropus vampyrus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPVAG00000000297 T40826_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.981
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPVAP00000000272 RRM 310 378
ENSPVAP00000000272 RRM 396 461
ENSPVAP00000000272 RRM 489 555
ENSPVAP00000000272 RRM 575 642

Links

Other RRM family RBPs
Other Pteropus vampyrus RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCL Canis familiaris ENSCAFG00000011037 I 0.981
NCL Bos taurus ENSBTAG00000016174 I 0.981
NCL Homo sapiens ENSG00000115053 D 0.981
NCL Gorilla gorilla ENSGGOG00000004300 I 0.981
NCL Macaca mulatta ENSMMUG00000018094 I 0.981
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.981
NCL Pan troglodytes ENSPTRG00000013025 I 0.981
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.978
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.978
NCL Tursiops truncatus ENSTTRG00000009094 I 0.974
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.974
NCL Tarsius syrichta ENSTSYG00000004355 I 0.967
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.963
NCL Microcebus murinus ENSMICG00000002538 I 0.944
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.930
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.930
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.926
Ncl Mus musculus ENSMUSG00000026234 I 0.889
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.889
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.885
Ncl Dipodomys ordii ENSDORG00000012513 I 0.867
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.856
NCL Cavia porcellus ENSCPOG00000001034 I 0.856
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.848
NCL Vicugna pacos ENSVPAG00000001796 I 0.833
NCL Loxodonta africana ENSLAFG00000013061 I 0.830
ENSTBEG00000001546 Tupaia belangeri ENSTBEG00000001546 I 0.830
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.823
NCL Macropus eugenii ENSMEUG00000012335 I 0.815
NCL Monodelphis domestica ENSMODG00000002470 I 0.812
ENSTBEG00000002469 Tupaia belangeri ENSTBEG00000002469 I 0.811
NCL Choloepus hoffmanni ENSCHOG00000012860 I 0.759
NCL Sorex araneus ENSSARG00000010007 I 0.748
NUCL_CHICK Gallus gallus ENSGALG00000007705 I 0.712
NCL Meleagris gallopavo ENSMGAG00000008147 I 0.705
ENSGGOG00000022986 Gorilla gorilla ENSGGOG00000022986 I 0.704
NCL Anolis carolinensis ENSACAG00000001006 N 0.701