NCL (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000011037 T35094_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.981
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000016318 RRM 302 370
ENSCAFP00000016318 RRM 388 453
ENSCAFP00000016318 RRM 481 547
ENSCAFP00000016318 RRM 567 634

Links

Other RRM family RBPs
Other Canis familiaris RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.989
NCL Tursiops truncatus ENSTTRG00000009094 I 0.985
NCL Bos taurus ENSBTAG00000016174 I 0.985
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.985
NCL Homo sapiens ENSG00000115053 D 0.981
NCL Pan troglodytes ENSPTRG00000013025 I 0.981
NCL Macaca mulatta ENSMMUG00000018094 I 0.981
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.981
NCL Gorilla gorilla ENSGGOG00000004300 I 0.981
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.978
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.978
NCL Tarsius syrichta ENSTSYG00000004355 I 0.970
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.967
NCL Microcebus murinus ENSMICG00000002538 I 0.944
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.922
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.919
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.919
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.893
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.893
Ncl Mus musculus ENSMUSG00000026234 I 0.885
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.863
Ncl Dipodomys ordii ENSDORG00000012513 I 0.863
NCL Cavia porcellus ENSCPOG00000001034 I 0.856
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.844
NCL Vicugna pacos ENSVPAG00000001796 I 0.841
NCL Loxodonta africana ENSLAFG00000013061 I 0.830
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.823
ENSTBEG00000001546 Tupaia belangeri ENSTBEG00000001546 I 0.822
NCL Macropus eugenii ENSMEUG00000012335 I 0.812
NCL Monodelphis domestica ENSMODG00000002470 I 0.808
ENSTBEG00000002469 Tupaia belangeri ENSTBEG00000002469 I 0.807
NCL Choloepus hoffmanni ENSCHOG00000012860 I 0.767
NCL Sorex araneus ENSSARG00000010007 I 0.744
NUCL_CHICK Gallus gallus ENSGALG00000007705 I 0.712
ENSGGOG00000022986 Gorilla gorilla ENSGGOG00000022986 I 0.711
NCL Meleagris gallopavo ENSMGAG00000008147 I 0.705
NCL Anolis carolinensis ENSACAG00000001006 N 0.701