NCL (Tursiops truncatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTTRG00000009094 T42607_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.967
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTTRP00000008621 RRM 308 376
ENSTTRP00000008621 RRM 394 459
ENSTTRP00000008621 RRM 487 553
ENSTTRP00000008621 RRM 573 640

Links

Other RRM family RBPs
Other Tursiops truncatus RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCL Canis familiaris ENSCAFG00000011037 I 0.985
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.981
NCL Bos taurus ENSBTAG00000016174 I 0.978
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.978
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.974
NCL Pan troglodytes ENSPTRG00000013025 I 0.967
NCL Homo sapiens ENSG00000115053 D 0.967
NCL Gorilla gorilla ENSGGOG00000004300 I 0.967
NCL Macaca mulatta ENSMMUG00000018094 I 0.967
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.963
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.963
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.959
NCL Tarsius syrichta ENSTSYG00000004355 I 0.956
NCL Microcebus murinus ENSMICG00000002538 I 0.930
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.915
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.911
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.911
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.889
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.889
Ncl Mus musculus ENSMUSG00000026234 I 0.881
Ncl Dipodomys ordii ENSDORG00000012513 I 0.852
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.848
NCL Cavia porcellus ENSCPOG00000001034 I 0.844
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.837
NCL Vicugna pacos ENSVPAG00000001796 I 0.837
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.834
NCL Loxodonta africana ENSLAFG00000013061 I 0.822
NCL Monodelphis domestica ENSMODG00000002470 I 0.819
NCL Macropus eugenii ENSMEUG00000012335 I 0.815
ENSTBEG00000001546 Tupaia belangeri ENSTBEG00000001546 I 0.807
ENSTBEG00000002469 Tupaia belangeri ENSTBEG00000002469 I 0.796
NCL Choloepus hoffmanni ENSCHOG00000012860 I 0.763
NCL Sorex araneus ENSSARG00000010007 I 0.733
NUCL_CHICK Gallus gallus ENSGALG00000007705 I 0.708
NCL Meleagris gallopavo ENSMGAG00000008147 I 0.708
NCL Anolis carolinensis ENSACAG00000001006 N 0.705
ENSGGOG00000022986 Gorilla gorilla ENSGGOG00000022986 I 0.700