NCL (Bos taurus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSBTAG00000016174 T34877_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.974
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000021529 RRM 319 387
ENSBTAP00000021529 RRM 405 470
ENSBTAP00000021529 RRM 498 564
ENSBTAP00000021529 RRM 584 651

Links

Other RRM family RBPs
Other Bos taurus RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.985
NCL Canis familiaris ENSCAFG00000011037 I 0.985
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.981
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.981
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.981
NCL Tursiops truncatus ENSTTRG00000009094 I 0.978
NCL Gorilla gorilla ENSGGOG00000004300 I 0.974
NCL Pan troglodytes ENSPTRG00000013025 I 0.974
NCL Homo sapiens ENSG00000115053 D 0.974
NCL Macaca mulatta ENSMMUG00000018094 I 0.974
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.970
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.963
NCL Tarsius syrichta ENSTSYG00000004355 I 0.963
NCL Microcebus murinus ENSMICG00000002538 I 0.941
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.922
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.922
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.919
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.893
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.889
Ncl Mus musculus ENSMUSG00000026234 I 0.885
Ncl Dipodomys ordii ENSDORG00000012513 I 0.863
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.852
NCL Cavia porcellus ENSCPOG00000001034 I 0.848
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.848
NCL Vicugna pacos ENSVPAG00000001796 I 0.833
NCL Loxodonta africana ENSLAFG00000013061 I 0.830
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.819
ENSTBEG00000001546 Tupaia belangeri ENSTBEG00000001546 I 0.819
NCL Macropus eugenii ENSMEUG00000012335 I 0.815
NCL Monodelphis domestica ENSMODG00000002470 I 0.812
ENSTBEG00000002469 Tupaia belangeri ENSTBEG00000002469 I 0.800
NCL Choloepus hoffmanni ENSCHOG00000012860 I 0.770
NCL Sorex araneus ENSSARG00000010007 I 0.741
NUCL_CHICK Gallus gallus ENSGALG00000007705 I 0.720
NCL Meleagris gallopavo ENSMGAG00000008147 I 0.712
ENSGGOG00000022986 Gorilla gorilla ENSGGOG00000022986 I 0.711
NCL Anolis carolinensis ENSACAG00000001006 N 0.705