Ame_R005385 (Ailuropoda melanoleuca)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Ame_R005385 T55529_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.974
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R005385 RRM 272 340
Ame_R005385 RRM 358 423
Ame_R005385 RRM 451 517
Ame_R005385 RRM 537 604

Links

Other RRM family RBPs
Other Ailuropoda melanoleuca RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCL Canis familiaris ENSCAFG00000011037 I 0.989
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.989
NCL Tursiops truncatus ENSTTRG00000009094 I 0.981
NCL Bos taurus ENSBTAG00000016174 I 0.981
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.981
NCL Macaca mulatta ENSMMUG00000018094 I 0.974
NCL Gorilla gorilla ENSGGOG00000004300 I 0.974
NCL Homo sapiens ENSG00000115053 D 0.974
NCL Pan troglodytes ENSPTRG00000013025 I 0.974
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.970
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.970
NCL Tarsius syrichta ENSTSYG00000004355 I 0.963
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.963
NCL Microcebus murinus ENSMICG00000002538 I 0.937
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.922
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.922
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.915
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.889
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.889
Ncl Mus musculus ENSMUSG00000026234 I 0.881
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.856
Ncl Dipodomys ordii ENSDORG00000012513 I 0.852
NCL Cavia porcellus ENSCPOG00000001034 I 0.848
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.844
NCL Vicugna pacos ENSVPAG00000001796 I 0.837
NCL Loxodonta africana ENSLAFG00000013061 I 0.826
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.823
ENSTBEG00000001546 Tupaia belangeri ENSTBEG00000001546 I 0.822
NCL Macropus eugenii ENSMEUG00000012335 I 0.812
NCL Monodelphis domestica ENSMODG00000002470 I 0.808
ENSTBEG00000002469 Tupaia belangeri ENSTBEG00000002469 I 0.807
NCL Choloepus hoffmanni ENSCHOG00000012860 I 0.763
NCL Sorex araneus ENSSARG00000010007 I 0.737
NUCL_CHICK Gallus gallus ENSGALG00000007705 I 0.716
ENSGGOG00000022986 Gorilla gorilla ENSGGOG00000022986 I 0.711
NCL Meleagris gallopavo ENSMGAG00000008147 I 0.708
NCL Anolis carolinensis ENSACAG00000001006 N 0.705