CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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B9NB27_POPTR
(
Populus trichocarpa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
POPTR_0016s11470
T45681_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0016s11470.1
RRM
90
159
LYISNLDFGVSTEDIKELFSEIGDLKRYSVHYDRSGRSEGTAEIVFARREDAVSAVKRYNNVQLDGKPMK
POPTR_0016s11470.2
RRM
90
159
LYISNLDFGVSTEDIKELFSEIGDLKRYSVHYDRSGRSEGTAEIVFARREDAVSAVKRYNNVQLDGKPMK
Links
Other
RRM
family RBPs
Other
Populus trichocarpa
RBPs
64 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PBANKA_120080
Plasmodium berghei
PBANKA_120080
N
0.000
PCHAS_120150
Plasmodium chabaudi
PCHAS_120150
N
0.000
PF10_0028-b
Plasmodium falciparum
PF10_0028-b
N
0.000
PVX_094315
Plasmodium vivax
PVX_094315
N
0.000