e_gw1.3.432.1 (Micromonas pusilla)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw1.3.432.1 T49968_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.804
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.713
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.706
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.701
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.3.432.1 RRM 10 80
e_gw1.3.432.1 RRM 97 168

Links

Other RRM family RBPs
Other Micromonas pusilla RBPs

105 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.734
AAEL013795 Aedes aegypti AAEL013795 I 0.734
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.713
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.713
AGAP001538 Anopheles gambiae AGAP001538 I 0.734
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.727
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.776
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.769
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.713
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.797
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.713
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.713
CBN06124 Caenorhabditis brenneri CBN06124 I 0.713
sap-49 Caenorhabditis elegans C08B11.5 D 0.713
CJA19238 Caenorhabditis japonica CJA19238 I 0.706
CRE01639 Caenorhabditis remanei CRE01639 I 0.713
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.713
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.713
PK08238.1 Cannabis sativa PK08238.1 I 0.818
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.734
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.713
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.790
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.727
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.755
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.755
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.811
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.734
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.734
sf3b4 Danio rerio ENSDARG00000018574 D 0.713
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.706
GF20385 Drosophila ananassae FBgn0097392 I 0.713
GG19577 Drosophila erecta FBgn0111779 I 0.713
GH17589 Drosophila grimshawi FBgn0125059 I 0.720
Spx Drosophila melanogaster FBgn0015818 I 0.706
GI16317 Drosophila mojavensis FBgn0139065 I 0.720
GL21313 Drosophila persimilis FBgn0158906 I 0.713
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.713
GM12470 Drosophila sechellia FBgn0167407 I 0.706
GJ15655 Drosophila virilis FBgn0202845 I 0.720
GK19717 Drosophila willistoni FBgn0221715 I 0.713
GE16738 Drosophila yakuba FBgn0234234 I 0.713
estExtDG_fgenesh_newKGs_kg.C_520059 Emiliania huxleyi estExtDG_fgenesh_newKGs_kg.C_520059 I 0.727
LOC100054350 Equus caballus ENSECAG00000024737 I 0.713
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.713
SF3B4 Gallus gallus ENSGALG00000013352 I 0.713
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.713
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.804
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.811
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.713
99199 Helobdella robusta 99199 I 0.727
SF3B4 Homo sapiens ENSG00000143368 I 0.713
ISCW010601 Ixodes scapularis ISCW010601 I 0.734
LOAG_01189 Loa loa LOAG_01189 I 0.706
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.748
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.713
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.713
MDP0000131129 Malus x domestica MDP0000131129 I 0.825
MDP0000320945 Malus x domestica MDP0000320945 I 0.825
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.818
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.811
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.713
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.713
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.713
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.713
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.713
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.727
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.713
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.713
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.741
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.713
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.797
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.797
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.713
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.776
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.748
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.748
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.713
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.713
PHUM263440 Pediculus humanus PHUM263440 I 0.734
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.804
estExt_Genewise1Plus.C_00387 Phytophthora capsici estExt_Genewise1Plus.C_00387 N 0.713
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.804
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.706
ppa007508m Prunus persica ppa007508m I 0.818
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.713
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.713
30183.m001303 Ricinus communis 30183.m001303 I 0.783
Smp_067420 Schistosoma mansoni Smp_067420 D 0.706
SB01G020190 Sorghum bicolor Sb01g020190 I 0.797
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.741
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.741
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.713
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.713
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.713
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.713
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.713
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.713
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.713
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.839
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.706
AAH45264 Xenopus laevis AAH45264 I 0.720
AAH77458 Xenopus laevis AAH77458 I 0.720
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.713
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.790
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.790