Ame_R015025 (Ailuropoda melanoleuca)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Ame_R015025 T55611_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2AF2
M077_0.6 		Homo sapiens UUUUUYC RNAcompete
Ray et al.(2013)
RNCMPT00079 		1.000
U2af50
M078_0.6 		Drosophila melanogaster UUUUUYY RNAcompete
Ray et al.(2013)
RNCMPT00080 		0.798
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R015025 RRM 90 164
Ame_R015025 RRM 200 270
Ame_R015025 RRM 339 400

Links

Other RRM family RBPs
Other Ailuropoda melanoleuca RBPs

61 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s12651g2t1 Acyrtosiphon pisum DGIL_AUG5s12651g2t1 I 0.731
DGIL_AUG5s4302g1t1 Acyrtosiphon pisum DGIL_AUG5s4302g1t1 I 0.779
DGIL_AUG5s6719g2t1 Acyrtosiphon pisum DGIL_AUG5s6719g2t1 I 0.779
AAEL002818 Aedes aegypti AAEL002818 I 0.793
Aqu1.223751 Amphimedon queenslandica Aqu1.223751 I 0.705
U2AF2 Anolis carolinensis ENSACAG00000015489 I 0.995
AGAP002908 Anopheles gambiae AGAP002908 I 0.793
amel4_ncbi_hmm5234 Apis mellifera amel4_ncbi_hmm5234 I 0.803
BGIBMGA007082 Bombyx mori BGIBMGA007082 I 0.808
Q24JZ8_BOVIN Bos taurus ENSBTAG00000002830 I 0.995
CBG15152 Caenorhabditis briggsae CBG15152 I 0.711
LOC100400743 Callithrix jacchus ENSCJAG00000017128 I 0.851
U2AF2 Canis familiaris ENSCAFG00000002551 I 0.995
estExt_Genewise1.C_1170024 Capitella teleta estExt_Genewise1.C_1170024 I 0.793
U2AF2 Cavia porcellus ENSCPOG00000001582 I 1.000
ENSCING00000003455 Ciona intestinalis ENSCING00000003455 I 0.767
ENSCSAVG00000006813 Ciona savignyi ENSCSAVG00000006813 I 0.775
CpipJ_CPIJ012850 Culex pipiens CpipJ_CPIJ012850 I 0.793
CPIJ012850 Culex quinquefasciatus CPIJ012850 I 0.793
u2af2b Danio rerio ENSDARG00000011740 I 0.933
u2af2a Danio rerio ENSDARG00000012505 I 0.947
U2af2 Dipodomys ordii ENSDORG00000003250 I 0.856
GF19596 Drosophila ananassae FBgn0096603 I 0.798
GG19328 Drosophila erecta FBgn0111532 I 0.798
GH12033 Drosophila grimshawi FBgn0119512 I 0.788
U2af50 Drosophila melanogaster FBgn0005411 D 0.798
GI14308 Drosophila mojavensis FBgn0137061 I 0.788
GL15893 Drosophila persimilis FBgn0153497 I 0.798
GA22177-RA Drosophila pseudoobscura FBgn0082156 I 0.798
GM13406 Drosophila sechellia FBgn0168337 I 0.798
GD24494 Drosophila simulans FBgn0195829 I 0.798
GJ19364 Drosophila virilis FBgn0206507 I 0.736
GK10063 Drosophila willistoni FBgn0212078 I 0.798
GE15975 Drosophila yakuba FBgn0233531 I 0.798
LOC100050729 Equus caballus ENSECAG00000010110 I 1.000
U2AF2 Felis catus ENSFCAG00000011504 I 0.803
ENSGACG00000014500 Gasterosteus aculeatus ENSGACG00000014500 I 0.876
U2AF2 Gasterosteus aculeatus ENSGACG00000010632 I 0.957
185543 Helobdella robusta 185543 I 0.787
U2AF2 Homo sapiens ENSG00000063244 D 1.000
estExt_Genewise1.C_sca_340148 Lottia gigantea estExt_Genewise1.C_sca_340148 I 0.832
ENSLAFG00000018056 Loxodonta africana ENSLAFG00000018056 I 1.000
XM_001119590.1 Macaca mulatta ENSMMUG00000019197 I 0.856
ENSMMUG00000004810 Macaca mulatta ENSMMUG00000004810 I 1.000
U2AF2 Macropus eugenii ENSMEUG00000002346 I 0.712
U2af2 Mus musculus ENSMUSG00000030435 I 1.000
nasonia_NCBI_hmm415104 Nasonia vitripennis nasonia_NCBI_hmm415104 I 0.808
fgenesh1_pm.scaffold_8000042 Nematostella vectensis fgenesh1_pm.scaffold_8000042 I 0.746
U2AF2 Oryzias latipes ENSORLG00000011545 I 0.952
U2AF2 Pan troglodytes ENSPTRG00000011523 I 0.856
PHUM460480 Pediculus humanus PHUM460480 I 0.798
U2AF2 Pteropus vampyrus ENSPVAG00000004540 I 0.990
LOC690372 Rattus norvegicus ENSRNOG00000015914 I 1.000
Smp_019690 Schistosoma mansoni Smp_019690 I 0.769
U2AF2 Takifugu rubripes ENSTRUG00000005514 I 0.952
ENSTRUG00000006885 Takifugu rubripes ENSTRUG00000006885 I 0.885
U2AF2 Tetraodon nigroviridis ENSTNIG00000008106 I 0.957
ENSTNIG00000011257 Tetraodon nigroviridis ENSTNIG00000011257 I 0.867
U2AF2 Tursiops truncatus ENSTTRG00000000987 I 1.000
AAH44032 Xenopus laevis AAH44032 I 0.990
u2af2 Xenopus tropicalis ENSXETG00000019128 I 0.990