fgeneshCV_pg.C_scaffold_11000142 (Chlorella vulgaris)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 fgeneshCV_pg.C_scaffold_11000142 T21712_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgeneshCV_pg.C_scaffold_11000142 KH 157 206

Links

Other KH family RBPs
Other Chlorella vulgaris RBPs

185 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Genemark1.5719_g Coccomyxa C 169 Genemark1.5719_g N 1.000
Chlre2_kg.scaffold_20000177 Chlamydomonas reinhardtii Chlre2_kg.scaffold_20000177 N 0.840
estExt_Genewise1Plus.C_600117 Volvox carteri estExt_Genewise1Plus.C_600117 N 0.840
XP_002162789.1 Hydra magnipapillata XP_002162789.1 N 0.820
BGIBMGA014064 Bombyx mori BGIBMGA014064 N 0.820
amel4_ncbi_hmm14037 Apis mellifera amel4_ncbi_hmm14037 N 0.820
XP_001202160.1 Strongylocentrotus purpuratus XP_001202160.1 N 0.800
XP_001202155.1 Strongylocentrotus purpuratus XP_001202155.1 N 0.800
XP_791733.2 Strongylocentrotus purpuratus XP_791733.2 N 0.800
PHUM356890 Pediculus humanus PHUM356890 N 0.800
XP_798188.2 Strongylocentrotus purpuratus XP_798188.2 N 0.800
GJ15820 Drosophila virilis FBgn0203007 N 0.784
GA11169-RA Drosophila pseudoobscura FBgn0071224 N 0.784
GH12628 Drosophila grimshawi FBgn0120107 N 0.784
Bm1_42995 Brugia malayi Bm1_42995 N 0.780
estExt_fgenesh1_pg.C_110137 Monosiga brevicollis estExt_fgenesh1_pg.C_110137 N 0.780
ENSCING00000009577 Ciona intestinalis ENSCING00000009577 N 0.780
LOAG_05624 Loa loa LOAG_05624 N 0.780
RO3G_05288 Rhizopus oryzae RO3G_05288 N 0.780
WUBG_12774 Wuchereria bancrofti WUBG_12774 N 0.780
PNO1_IXOSC Ixodes scapularis ISCW023560 N 0.780
RO3G_00885 Rhizopus oryzae RO3G_00885 N 0.780
cassava7030.valid.m1 Manihot esculenta cassava7030.valid.m1 N 0.780
e_gw1.4.614.1 Micromonas pusilla e_gw1.4.614.1 N 0.780
pno1 Dictyostelium discoideum DDB_G0287557 N 0.780
e_gww2.1.865.1 Phanerochaete chrysosporium e_gww2.1.865.1 N 0.780
Q8AVH4 Xenopus laevis Q8AVH4 N 0.780
GID1.0042265 Dictyostelium purpureum GID1.0042265 N 0.780
fgeneshTA2_pg.C_scaffold_14000176 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_14000176 N 0.780
PNO1_CHICK Gallus gallus ENSGALG00000009093 N 0.780
EFA79428.1 Polysphondylium pallidum EFA79428.1 N 0.780
ENSCSAVG00000001303 Ciona savignyi ENSCSAVG00000001303 N 0.780
PNO1 Meleagris gallopavo ENSMGAG00000004514 N 0.780
pno1 Danio rerio ENSDARG00000008502 N 0.780
Q6VBQ6_ORYLA Oryzias latipes ENSORLG00000002371 N 0.780
pno1 Xenopus tropicalis ENSXETG00000017349 N 0.780
fgenesh3_pm.54__15 Postia placenta fgenesh3_pm.54__15 N 0.780
AAH42279 Xenopus laevis AAH42279 N 0.780
AAQ24169 Xenopus laevis AAQ24169 N 0.780
fgenesh1_pg.C_scaffold_107000027 Daphnia pulex fgenesh1_pg.C_scaffold_107000027 N 0.780
fgenesh1_pg.scaffold_18000119 Nematostella vectensis fgenesh1_pg.scaffold_18000119 N 0.780
GI11042 Drosophila mojavensis FBgn0133805 N 0.765
GK20148 Drosophila willistoni FBgn0222145 N 0.765
GG19285 Drosophila erecta FBgn0111489 N 0.765
GF20246 Drosophila ananassae FBgn0097253 N 0.765
GE17874 Drosophila yakuba FBgn0068478 N 0.765
GD17488 Drosophila simulans FBgn0189040 N 0.765
GM23025 Drosophila sechellia FBgn0177893 N 0.765
l(1)G0004 Drosophila melanogaster FBgn0027334 N 0.765
nasonia_NCBI_hmm120183 Nasonia vitripennis nasonia_NCBI_hmm120183 N 0.760
PNO1 Anolis carolinensis ENSACAG00000001218 N 0.760
DGIL_AUG5s4501g8t1 Acyrtosiphon pisum DGIL_AUG5s4501g8t1 N 0.760
PNO1 Takifugu rubripes ENSTRUG00000012470 N 0.760
PNO1 Tetraodon nigroviridis ENSTNIG00000009825 N 0.760
PNO1 Taeniopygia guttata ENSTGUG00000002369 N 0.760
cassava30594.valid.m1 Manihot esculenta cassava30594.valid.m1 N 0.760
estExt_Genewise1Plus.C_10658 Mucor circinelloides estExt_Genewise1Plus.C_10658 N 0.760
e_gw1.12.287.1 Serpula lacrymans e_gw1.12.287.1 N 0.760
e_gw1.2.756.1 Heterobasidion annosum e_gw1.2.756.1 N 0.760
fgenesh2_pg.scaffold_196000015 Branchiostoma floridae fgenesh2_pg.scaffold_196000015 N 0.760
gw1.1.2472.1 Pleurotus ostreatus gw1.1.2472.1 N 0.760
fgenesh2_pm.scaffold_78000001 Branchiostoma floridae fgenesh2_pm.scaffold_78000001 N 0.760
e_gw1.7.528.1 Ostreococcus RCC809 e_gw1.7.528.1 N 0.760
e_gwEuk.7.409.1 Ostreococcus lucimarinus e_gwEuk.7.409.1 N 0.760
e_gw1.18.222.1 Chlorella NC64A e_gw1.18.222.1 N 0.760
GSPATP00020703001 Paramecium tetraurelia GSPATP00020703001 N 0.760
GSPATP00021981001 Paramecium tetraurelia GSPATP00021981001 N 0.760
PNO1 Sus scrofa ENSSSCG00000008352 N 0.740
e_gw1.15.315.1 Tremella mesenterica e_gw1.15.315.1 N 0.740
ENSOCUG00000006100 Oryctolagus cuniculus ENSOCUG00000006100 N 0.740
Pno1 Rattus norvegicus ENSRNOG00000005524 N 0.740
PNO1 Ochotona princeps ENSOPRG00000009643 N 0.740
ENSPPYG00000012353 Pongo pygmaeus ENSPPYG00000012353 N 0.740
PNO1 Procavia capensis ENSPCAG00000016146 N 0.740
PNO1 Pan troglodytes ENSPTRG00000011999 N 0.740
PNO1 Pteropus vampyrus ENSPVAG00000012695 N 0.740
0700010277 Ostreococcus tauri 0700010277 N 0.740
Cucsa.041830 Cucumis sativus Cucsa.041830 N 0.740
Cucsa.201760 Cucumis sativus Cucsa.201760 N 0.740
PNO1 Ornithorhynchus anatinus ENSOANG00000008388 N 0.740
28525.m000262 Ricinus communis 28525.m000262 N 0.740
B9N5M8_POPTR Populus trichocarpa POPTR_0011s16880 N 0.740
e_gw1.13.100.1 Volvox carteri e_gw1.13.100.1 N 0.740
estExt_Genewise1Plus.C_250095 Phycomyces blakesleeanus estExt_Genewise1Plus.C_250095 N 0.740
PNO1 Vicugna pacos ENSVPAG00000012083 N 0.740
PNO1 Tursiops truncatus ENSTTRG00000014002 N 0.740
B9GHH7_POPTR Populus trichocarpa POPTR_0001s47320 N 0.740
Medtr3g080390 Medicago truncatula Medtr3g080390 N 0.740
fgenesh1_kg.C_scaffold_5000048 Selaginella moellendorfii fgenesh1_kg.C_scaffold_5000048 N 0.740
Ame_R013855 Ailuropoda melanoleuca Ame_R013855 N 0.740
ENSOCUG00000022236 Oryctolagus cuniculus ENSOCUG00000022236 N 0.740
PNO1 Canis familiaris ENSCAFG00000003256 N 0.740
LOC100389955 Callithrix jacchus ENSCJAG00000006564 N 0.740
Pno1 Dipodomys ordii ENSDORG00000006867 N 0.740
LOC100061904 Equus caballus ENSECAG00000011263 N 0.740
PNO1_BOVIN Bos taurus ENSBTAG00000010604 N 0.740
Pno1 Mus musculus ENSMUSG00000020116 N 0.740
PTSG_04415 Salpingoeca rosetta PTSG_04415 N 0.740
AMAG_12889 Allomyces macrogynus AMAG_12889 N 0.740
AMAG_14219 Allomyces macrogynus AMAG_14219 N 0.740
LjSGA_017760.2 Lotus japonicus LjSGA_017760.2 N 0.740
PNO1 Erinaceus europaeus ENSEEUG00000009611 N 0.740
PNO1 Cavia porcellus ENSCPOG00000010130 N 0.740
XM_001095777.1 Macaca mulatta ENSMMUG00000030357 N 0.740
PNO1 Homo sapiens ENSG00000115946 N 0.740
PNO1 Myotis lucifugus ENSMLUG00000010850 N 0.740
Q7YRC8_MACMU Macaca mulatta ENSMMUG00000017461 N 0.740
PNO1 Microcebus murinus ENSMICG00000010897 N 0.740
PNO1 Macropus eugenii ENSMEUG00000004504 N 0.740
PNO1 Gorilla gorilla ENSGGOG00000009158 N 0.740
PNO1 Gasterosteus aculeatus ENSGACG00000012047 N 0.740
PNO1 Monodelphis domestica ENSMODG00000003567 N 0.740
PNO1 Loxodonta africana ENSLAFG00000000046 N 0.740
BC1G_12211 Botrytis cinerea BC1G_12211 N 0.720
YALI0E01122g Yarrowia lipolytica YALI0E01122g N 0.720
estExt_genewise1_human.C_chr_1.20929 Pichia stipitis estExt_genewise1_human.C_chr_1.20929 N 0.720
CIMG_07268 Coccidioides immitis CIMG_07268 N 0.720
e_gwh1.2.512.1 Laccaria bicolor e_gwh1.2.512.1 N 0.720
SAKL0G03740g Lachancea kluyveri SAKL0G03740g N 0.720
CLUG_01545 Candida lusitaniae CLUG_01545 N 0.720
CPAG_01545 Candida parapsilosis CPAG_01545 N 0.720
estExt_Genewise1.C_260084 Melampsora laricis populina estExt_Genewise1.C_260084 N 0.720
estExt_Genewise1.C_5820041 Capitella teleta estExt_Genewise1.C_5820041 N 0.720
A7THL8_VANPO Vanderwaltozyma polyspora A7THL8_VANPO N 0.720
CAGL0K09460g Candida glabrata CAGL0K09460g N 0.720
MDP0000120063 Malus x domestica MDP0000120063 N 0.720
Cd36_35296 Candida dubliniensis Cd36_35296 N 0.720
GSTUMT00003923001 Tuber melanosporum GSTUMT00003923001 N 0.720
estExt_fgenesh2_kg.C_20130 Agaricus bisporus estExt_fgenesh2_kg.C_20130 N 0.720
MDP0000136407 Malus x domestica MDP0000136407 N 0.720
MDP0000265633 Malus x domestica MDP0000265633 N 0.720
MDP0000754021 Malus x domestica MDP0000754021 N 0.720
ppa009897m Prunus persica ppa009897m N 0.720
Glyma08g44800.1 Glycine max Glyma08g44800.1 N 0.720
Glyma18g08080.1 Glycine max Glyma18g08080.1 N 0.720
Glyma18g08100.1 Glycine max Glyma18g08100.1 N 0.720
ppa011086m Prunus persica ppa011086m N 0.720
CpipJ_CPIJ015853 Culex pipiens CpipJ_CPIJ015853 N 0.720
SPOG_00402 Schizosaccharomyces cryophilus SPOG_00402 N 0.720
SOCG_04140 Schizosaccharomyces octosporus SOCG_04140 N 0.720
rbp28 Schizosaccharomyces pombe SPAC2C4.11c N 0.720
orf19.7618 Candida albicans orf19.7618 N 0.720
SPRG_02415 Saprolegnia parasitica SPRG_02415 N 0.720
SS1G_04290 Sclerotinia sclerotiorum SS1G_04290 N 0.720
CPIJ019677 Culex quinquefasciatus CPIJ019677 N 0.720
CPIJ015853 Culex quinquefasciatus CPIJ015853 N 0.720
PK08146.1 Cannabis sativa PK08146.1 N 0.720
LELG_05249 Lodderomyces elongisporus LELG_05249 N 0.720
PTTG_01898 Puccinia triticina PTTG_01898 N 0.720
CpipJ_CPIJ019677 Culex pipiens CpipJ_CPIJ019677 N 0.720
CTRG_05813 Candida tropicalis CTRG_05813 N 0.720
e_gw1.2.2126.1 Schizophyllum commune e_gw1.2.2126.1 N 0.720
CPSG_08784 Coccidioides posadasii CPSG_08784 N 0.720
DEHA0G05258g Debaryomyces hansenii DEHA0G05258g N 0.720
20872_YOR145C Saccharomyces paradoxus 20872_YOR145C N 0.700
UREG_07832 Uncinocarpus reesii UREG_07832 N 0.700
estExt_fgenesh1_kg.C_140013 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_140013 N 0.700
Scas_Contig632.19 Saccharomyces castellii Scas_Contig632.19 N 0.700
Skud_Contig1833.8 Saccharomyces kudriavzevii Skud_Contig1833.8 N 0.700
23888_YOR145C Saccharomyces bayanus 23888_YOR145C N 0.700
Kwal_18864 Kluyveromyces waltii Kwal_18864 N 0.700
ENSCJAG00000022611 Callithrix jacchus ENSCJAG00000022611 N 0.700
XM_001110046.1 Macaca mulatta ENSMMUG00000003556 N 0.700
KLLA0C06446g Kluyveromyces lactis KLLA0C06446g N 0.700
KLTH0G02574g Kluyveromyces thermotolerans KLTH0G02574g N 0.700
e_gw1.226.39.1 Physcomitrella patens e_gw1.226.39.1 N 0.700
EDP42908.1 Malassezia globosa EDP42908.1 N 0.700
estExt_fgenesh2_pm.C_sca_70005 Lottia gigantea estExt_fgenesh2_pm.C_sca_70005 N 0.700
s_468317 Phytophthora sojae s_468317 N 0.700
PNO1 Saccharomyces cerevisiae YOR145C N 0.700
THAPSDRAFT_35041 Thalassiosira pseudonana Thaps35041 N 0.700
fgenesh1_pm.C_scaffold_5000030 Phytophthora ramorum fgenesh1_pm.C_scaffold_5000030 N 0.700
ZYRO0D11440g Zygosaccharomyces rouxii ZYRO0D11440g N 0.700
PITG_01680 Phytophthora infestans PITG_01680 N 0.700
estExt_Genewise1Plus.C_10659 Myceliophthora thermophila estExt_Genewise1Plus.C_10659 N 0.700
PGUG_02960 Candida guilliermondii PGUG_02960 N 0.700
PPA25260 Pristionchus pacificus PPA25260 N 0.700
PNO1 Ashbya gossypii PNO1 N 0.700
estExt_Genewise1.C_10689 Thielavia terrestris estExt_Genewise1.C_10689 N 0.700
GP3.070330 Batrachochytrium dendrobatidis GP3.070330 N 0.700
SNOG_03777 Stagonospora nodorum SNOG_03777 N 0.700
SJAG_03872 Schizosaccharomyces japonicus SJAG_03872 N 0.700
Pc14g01220 Penicillium chrysogenum Pc14g01220 N 0.700
e_gw1.8.261.1 Sporobolomyces roseus e_gw1.8.261.1 N 0.700
EAT88982.1 Phaeosphaeria nodorum EAT88982.1 N 0.700