CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BGIOSIBCE028530
(
Oryza indica
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
BGIOSIBCE028530
T24046_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGIOSIBCE028530
PUF
1470
1504
DIAGHIVEYSADQHGSRFIQQKLENCTAEEKASVF
BGIOSIBCE028530
PUF
1506
1540
EVLPHASSLMTDVFGNYVIQKFFEHGTPEQRRDLA
BGIOSIBCE028530
PUF
1542
1576
KLVGHVLPLSLQMYGCRVIQKALEVMELDQKIELV
BGIOSIBCE028530
PUF
1578
1611
ELDGNIMRCVRDQNGNHVIQKCIECVPTEHIGFV
BGIOSIBCE028530
PUF
1614
1648
AFRGQVASLSMHPYGCRVIQRVLEHCGGDSQGQCI
BGIOSIBCE028530
PUF
1651
1686
EILESACVLAQDQYGNYVTQHVLERGRGHERTQIIS
BGIOSIBCE028530
PUF
1687
1721
KLAGQVVTMSQNKFASNVIEKCFQHGDMTERDLLI
BGIOSIBCE028530
PUF
1729
1763
EGNDNLLAMMKDQYANYVVQKILETCNEQQRELLL
Links
Other
PUF
family RBPs
Other
Oryza indica
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os08g40830
Oryza sativa
LOC_Os08g40830
N
1.000
GRMZM2G035118
Zea mays
GRMZM2G035118
N
0.932
Sb07g026995
Sorghum bicolor
Sb07g026995
N
0.921
BRADI3G40520
Brachypodium distachyon
BRADI3G40520
N
0.907
GRMZM2G449123
Zea mays
GRMZM2G449123
N
0.904
GSVIVG00029553001
Vitis vinifera
GSVIVG00029553001
N
0.777
MDP0000277305
Malus x domestica
MDP0000277305
N
0.765
GSVIVG00031557001
Vitis vinifera
GSVIVG00031557001
N
0.763
Cucsa.149730
Cucumis sativus
Cucsa.149730
N
0.762
30169.m006300
Ricinus communis
30169.m006300
N
0.762
B9HK27_POPTR
Populus trichocarpa
POPTR_0008s00490
N
0.762
MDP0000265231
Malus x domestica
MDP0000265231
N
0.760
cassava9350.m1
Manihot esculenta
cassava9350.m1
N
0.758
PK12245.1
Cannabis sativa
PK12245.1
N
0.753
ppa016404m
Prunus persica
ppa016404m
N
0.752
cassava43126.valid.m1
Manihot esculenta
cassava43126.valid.m1
N
0.749
ppa000898m
Prunus persica
ppa000898m
N
0.746
Glyma09g06460.1
Glycine max
Glyma09g06460.1
N
0.746
Glyma15g17680.1
Glycine max
Glyma15g17680.1
N
0.742
MDP0000313902
Malus x domestica
MDP0000313902
N
0.740
LOC_Os09g32210
Oryza sativa
LOC_Os09g32210
N
0.736
POPTR_0022s00840
Populus trichocarpa
POPTR_0022s00840
N
0.731
e_gw1.96.1.1
Physcomitrella patens
e_gw1.96.1.1
N
0.727
Glyma13g00670.1
Glycine max
Glyma13g00670.1
N
0.727
mgf006786m
Mimulus guttatus
mgf006786m
N
0.727
Medtr2g041730
Medicago truncatula
Medtr2g041730
N
0.724
mgf002285m
Mimulus guttatus
mgf002285m
N
0.721
APUM5
Arabidopsis thaliana
AT3G20250-TAIR-G
N
0.718
gw1.2.45.1
Selaginella moellendorfii
gw1.2.45.1
N
0.716
BRADI4G34110
Brachypodium distachyon
BRADI4G34110
N
0.712
estExt_Genewise1.C_350182
Physcomitrella patens
estExt_Genewise1.C_350182
N
0.709
estExt_Genewise1.C_960051
Physcomitrella patens
estExt_Genewise1.C_960051
N
0.702
SB03G039600
Sorghum bicolor
Sb03g039600
N
0.702