CAOG_06059 (Capsaspora owczarzaki)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CAOG_06059 T28489_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.734
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.715
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.713
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CAOG_06059T0 RRM 14 84
CAOG_06059T0 RRM 100 171

Links

Other RRM family RBPs
Other Capsaspora owczarzaki RBPs

99 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.748
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.741
30183.m001303 Ricinus communis 30183.m001303 I 0.741
ISCW010601 Ixodes scapularis ISCW010601 I 0.741
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.741
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.741
PK08238.1 Cannabis sativa PK08238.1 I 0.741
MDP0000131129 Malus x domestica MDP0000131129 I 0.734
MDP0000320945 Malus x domestica MDP0000320945 I 0.734
PHUM263440 Pediculus humanus PHUM263440 I 0.734
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.734
ppa007508m Prunus persica ppa007508m I 0.734
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.734
Smp_067420 Schistosoma mansoni Smp_067420 D 0.734
AAEL013795 Aedes aegypti AAEL013795 I 0.734
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.734
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.734
AGAP001538 Anopheles gambiae AGAP001538 I 0.734
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.734
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.727
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.727
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.727
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.727
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.727
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.727
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.727
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.727
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.727
GJ15655 Drosophila virilis FBgn0202845 I 0.727
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.727
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.727
GI16317 Drosophila mojavensis FBgn0139065 I 0.727
GH17589 Drosophila grimshawi FBgn0125059 I 0.727
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.727
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.727
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.727
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.727
LOC100054350 Equus caballus ENSECAG00000024737 I 0.727
sf3b4 Danio rerio ENSDARG00000018574 D 0.727
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.727
SF3B4 Homo sapiens ENSG00000143368 I 0.727
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.727
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.727
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.727
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.727
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.727
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.727
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.727
SF3B4 Gallus gallus ENSGALG00000013352 I 0.727
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.727
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.727
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.727
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.727
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.727
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.727
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.727
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.727
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.727
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.727
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.720
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.720
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.720
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.720
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.720
GL21313 Drosophila persimilis FBgn0158906 I 0.720
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.720
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.720
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.720
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.720
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.720
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.720
AAH45264 Xenopus laevis AAH45264 I 0.720
GE16738 Drosophila yakuba FBgn0234234 I 0.720
GK19717 Drosophila willistoni FBgn0221715 I 0.720
AAH77458 Xenopus laevis AAH77458 I 0.720
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.720
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.720
SB01G020190 Sorghum bicolor Sb01g020190 I 0.720
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.720
GF20385 Drosophila ananassae FBgn0097392 I 0.720
GG19577 Drosophila erecta FBgn0111779 I 0.720
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.713
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.713
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.713
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.713
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.713
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.713
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.713
GM12470 Drosophila sechellia FBgn0167407 I 0.713
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.713
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.713
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.713
Spx Drosophila melanogaster FBgn0015818 I 0.713
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.706
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.706
99199 Helobdella robusta 99199 I 0.706
LOAG_01189 Loa loa LOAG_01189 I 0.706
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.706
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.703