AT5G19350 (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT5G19350-TAIR-G T32821_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT5G19350.1-P RRM 26 96
AT5G19350.1-P RRM 118 189
AT5G19350.1-P RRM 239 303
AT5G19350.2-P RRM 26 96
AT5G19350.2-P RRM 118 189
AT5G19350.2-P RRM 235 299

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002871835.1 Arabidopsis lyrata fgenesh2_kg.6__1954__AT5G19350.2 N 0.981
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.808
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.808
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.808
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.803
PK28027.1 Cannabis sativa PK28027.1 I 0.798
30169.m006434 Ricinus communis 30169.m006434 I 0.793
ppa005940m Prunus persica ppa005940m I 0.788
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.784
MDP0000276227 Malus x domestica MDP0000276227 I 0.774
SB01G045570 Sorghum bicolor Sb01g045570 I 0.774
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.774
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.769
Glyma13g41500.1 Glycine max Glyma13g41500.1 I 0.760
Glyma11g14150.1 Glycine max Glyma11g14150.1 N 0.755
mgf023806m Mimulus guttatus mgf023806m I 0.755
BRADI1G73030 Brachypodium distachyon BRADI1G73030 I 0.750
Glyma12g06120.1 Glycine max Glyma12g06120.1 N 0.740
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.702