Glyma13g41500.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma13g41500.1 T52835_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma13g41500.1 RRM 16 84
Glyma13g41500.1 RRM 109 180
Glyma13g41500.1 RRM 229 293

Links

Other RRM family RBPs
Other Glycine max RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.880
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.880
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.861
PK28027.1 Cannabis sativa PK28027.1 I 0.861
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.851
30169.m006434 Ricinus communis 30169.m006434 I 0.846
ppa005940m Prunus persica ppa005940m I 0.841
MDP0000276227 Malus x domestica MDP0000276227 I 0.837
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.837
Glyma11g14150.1 Glycine max Glyma11g14150.1 N 0.808
Glyma12g06120.1 Glycine max Glyma12g06120.1 N 0.798
SB01G045570 Sorghum bicolor Sb01g045570 I 0.779
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.774
mgf023806m Mimulus guttatus mgf023806m I 0.769
XM_002871835.1 Arabidopsis lyrata fgenesh2_kg.6__1954__AT5G19350.2 N 0.764
AT5G19350 Arabidopsis thaliana AT5G19350-TAIR-G N 0.760
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.755
BRADI1G73030 Brachypodium distachyon BRADI1G73030 I 0.755
MDP0000123012 Malus x domestica MDP0000123012 N 0.745
MDP0000123414 Malus x domestica MDP0000123414 N 0.740
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.725
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.725
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.716
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.715
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.700