30169.m006434 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 30169.m006434 T48777_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.764
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
30169.m006434 RRM 24 94
30169.m006434 RRM 117 188
30169.m006434 RRM 234 298

Links

Other RRM family RBPs
Other Ricinus communis RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.942
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.909
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.904
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.899
PK28027.1 Cannabis sativa PK28027.1 I 0.875
ppa005940m Prunus persica ppa005940m I 0.861
MDP0000276227 Malus x domestica MDP0000276227 I 0.856
SB01G045570 Sorghum bicolor Sb01g045570 I 0.846
Glyma13g41500.1 Glycine max Glyma13g41500.1 I 0.846
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.837
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.832
mgf023806m Mimulus guttatus mgf023806m I 0.812
Glyma11g14150.1 Glycine max Glyma11g14150.1 N 0.798
AT5G19350 Arabidopsis thaliana AT5G19350-TAIR-G N 0.793
BRADI1G73030 Brachypodium distachyon BRADI1G73030 I 0.793
XM_002871835.1 Arabidopsis lyrata fgenesh2_kg.6__1954__AT5G19350.2 N 0.793
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.788
Glyma12g06120.1 Glycine max Glyma12g06120.1 N 0.784
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.764
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.764
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.764
MDP0000123012 Malus x domestica MDP0000123012 N 0.760
MDP0000123414 Malus x domestica MDP0000123414 N 0.750
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.736
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.731
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.712
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.702
ppa005903m Prunus persica ppa005903m I 0.702
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.702
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.702
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.702