mgf023806m (Mimulus guttatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 mgf023806m T53793_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
mgf023806m RRM 10 80
mgf023806m RRM 103 174
mgf023806m RRM 227 291

Links

Other RRM family RBPs
Other Mimulus guttatus RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.822
30169.m006434 Ricinus communis 30169.m006434 I 0.812
ppa005940m Prunus persica ppa005940m I 0.808
PK28027.1 Cannabis sativa PK28027.1 I 0.803
MDP0000276227 Malus x domestica MDP0000276227 I 0.803
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.798
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.793
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.788
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.784
Glyma13g41500.1 Glycine max Glyma13g41500.1 I 0.769
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.760
SB01G045570 Sorghum bicolor Sb01g045570 I 0.760
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.760
Glyma11g14150.1 Glycine max Glyma11g14150.1 N 0.755
XM_002871835.1 Arabidopsis lyrata fgenesh2_kg.6__1954__AT5G19350.2 N 0.755
AT5G19350 Arabidopsis thaliana AT5G19350-TAIR-G N 0.755
BRADI1G73030 Brachypodium distachyon BRADI1G73030 I 0.750
Glyma12g06120.1 Glycine max Glyma12g06120.1 N 0.731
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.721
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.721
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.721
MDP0000123012 Malus x domestica MDP0000123012 N 0.716
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.716
MDP0000123414 Malus x domestica MDP0000123414 N 0.716
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.707