SPEN (Loxodonta africana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSLAFG00000004524 T37989_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000003776 RRM 23 74
ENSLAFP00000003776 RRM 336 406
ENSLAFP00000003776 RRM 439 506
ENSLAFP00000003776 RRM 518 582
ENSLAFP00000029376 RRM 1 49
ENSLAFP00000029376 RRM 311 381
ENSLAFP00000029376 RRM 414 481
ENSLAFP00000029376 RRM 493 557

Links

Other RRM family RBPs
Other Loxodonta africana RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC100053790 Equus caballus ENSECAG00000008833 N 0.996
Ame_R009637 Ailuropoda melanoleuca Ame_R009637 N 0.988
SPEN Tupaia belangeri ENSTBEG00000003628 N 0.977
SPEN Ochotona princeps ENSOPRG00000015800 N 0.972
SPEN Tarsius syrichta ENSTSYG00000007170 N 0.964
SPEN Anolis carolinensis ENSACAG00000013761 N 0.957
SPEN Tursiops truncatus ENSTTRG00000015704 N 0.949
SPEN Cavia porcellus ENSCPOG00000014036 N 0.945
SPEN Canis familiaris ENSCAFG00000016132 N 0.941
SPEN Monodelphis domestica ENSMODG00000003411 N 0.938
XR_024490.1 Pan troglodytes ENSPTRG00000000210 N 0.932
SPEN Bos taurus ENSBTAG00000018729 N 0.923
SPEN Callithrix jacchus ENSCJAG00000008527 N 0.923
SPEN Gorilla gorilla ENSGGOG00000012041 N 0.919
ENSPPYG00000001834 Pongo pygmaeus ENSPPYG00000001834 N 0.919
SPEN Pteropus vampyrus ENSPVAG00000013794 N 0.919
SPEN Homo sapiens ENSG00000065526 N 0.919
SPEN Spermophilus tridecemlineatus ENSSTOG00000005637 N 0.917
Spen Mus musculus ENSMUSG00000040761 N 0.915
SPEN Macaca mulatta ENSMMUG00000008026 N 0.915
LOC690911 Rattus norvegicus ENSRNOG00000033556 N 0.911
SPEN Oryctolagus cuniculus ENSOCUG00000010840 N 0.908
SPEN Meleagris gallopavo ENSMGAG00000005180 N 0.904
SPEN Gallus gallus ENSGALG00000003662 N 0.904
SPEN Takifugu rubripes ENSTRUG00000001017 N 0.845
SPEN Gasterosteus aculeatus ENSGACG00000005341 N 0.841
SPEN Tetraodon nigroviridis ENSTNIG00000010907 N 0.841
SPEN Ornithorhynchus anatinus ENSOANG00000004165 N 0.823
SPEN Gasterosteus aculeatus ENSGACG00000001176 N 0.819
SPEN Tetraodon nigroviridis ENSTNIG00000014666 N 0.819
SPEN Oryzias latipes ENSORLG00000018414 N 0.815
SPEN Danio rerio ENSDARG00000074332 N 0.812
SPEN Takifugu rubripes ENSTRUG00000011123 N 0.812
SPEN Erinaceus europaeus ENSEEUG00000010255 N 0.804
SPEN Macropus eugenii ENSMEUG00000002422 N 0.794
SPEN Myotis lucifugus ENSMLUG00000010144 N 0.765
spen Danio rerio ENSDARG00000074245 N 0.745