SPEN (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000010907 T42090_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000013837 RRM 8 74
ENSTNIP00000013837 RRM 334 403
ENSTNIP00000013837 RRM 436 503
ENSTNIP00000013837 RRM 515 579

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SPEN Takifugu rubripes ENSTRUG00000001017 N 0.996
SPEN Gasterosteus aculeatus ENSGACG00000005341 N 0.978
SPEN Callithrix jacchus ENSCJAG00000008527 N 0.919
SPEN Bos taurus ENSBTAG00000018729 N 0.919
SPEN Homo sapiens ENSG00000065526 N 0.915
SPEN Meleagris gallopavo ENSMGAG00000005180 N 0.915
ENSPPYG00000001834 Pongo pygmaeus ENSPPYG00000001834 N 0.915
SPEN Gorilla gorilla ENSGGOG00000012041 N 0.915
SPEN Gallus gallus ENSGALG00000003662 N 0.915
Spen Mus musculus ENSMUSG00000040761 N 0.911
SPEN Pteropus vampyrus ENSPVAG00000013794 N 0.911
LOC690911 Rattus norvegicus ENSRNOG00000033556 N 0.908
SPEN Macaca mulatta ENSMMUG00000008026 N 0.908
SPEN Tetraodon nigroviridis ENSTNIG00000014666 N 0.893
SPEN Gasterosteus aculeatus ENSGACG00000001176 N 0.889
SPEN Oryzias latipes ENSORLG00000018414 N 0.889
SPEN Takifugu rubripes ENSTRUG00000011123 N 0.886
XR_024490.1 Pan troglodytes ENSPTRG00000000210 N 0.871
SPEN Danio rerio ENSDARG00000074332 N 0.867
SPEN Tupaia belangeri ENSTBEG00000003628 N 0.856
Ame_R009637 Ailuropoda melanoleuca Ame_R009637 N 0.845
LOC100053790 Equus caballus ENSECAG00000008833 N 0.845
SPEN Loxodonta africana ENSLAFG00000004524 N 0.841
SPEN Anolis carolinensis ENSACAG00000013761 N 0.841
SPEN Monodelphis domestica ENSMODG00000003411 N 0.838
SPEN Ochotona princeps ENSOPRG00000015800 N 0.834
SPEN Tarsius syrichta ENSTSYG00000007170 N 0.830
spen Danio rerio ENSDARG00000074245 N 0.830
SPEN Tursiops truncatus ENSTTRG00000015704 N 0.815
SPEN Erinaceus europaeus ENSEEUG00000010255 N 0.804
SPEN Cavia porcellus ENSCPOG00000014036 N 0.801
SPEN Canis familiaris ENSCAFG00000016132 N 0.801
SPEN Oryctolagus cuniculus ENSOCUG00000010840 N 0.797
SPEN Spermophilus tridecemlineatus ENSSTOG00000005637 N 0.782
SPEN Ornithorhynchus anatinus ENSOANG00000004165 N 0.732
SPEN Myotis lucifugus ENSMLUG00000010144 N 0.720
SPEN Macropus eugenii ENSMEUG00000002422 N 0.708