SPEN (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000014666 T42126_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000017694 RRM 8 74
ENSTNIP00000017694 RRM 335 405
ENSTNIP00000017694 RRM 438 505
ENSTNIP00000017694 RRM 517 581

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SPEN Oryzias latipes ENSORLG00000018414 N 0.993
SPEN Takifugu rubripes ENSTRUG00000011123 N 0.993
SPEN Gasterosteus aculeatus ENSGACG00000001176 N 0.989
SPEN Danio rerio ENSDARG00000074332 N 0.948
SPEN Gasterosteus aculeatus ENSGACG00000005341 N 0.897
SPEN Takifugu rubripes ENSTRUG00000001017 N 0.897
SPEN Tetraodon nigroviridis ENSTNIG00000010907 N 0.893
SPEN Callithrix jacchus ENSCJAG00000008527 N 0.889
SPEN Bos taurus ENSBTAG00000018729 N 0.889
LOC690911 Rattus norvegicus ENSRNOG00000033556 N 0.886
ENSPPYG00000001834 Pongo pygmaeus ENSPPYG00000001834 N 0.886
Spen Mus musculus ENSMUSG00000040761 N 0.886
SPEN Gorilla gorilla ENSGGOG00000012041 N 0.886
SPEN Meleagris gallopavo ENSMGAG00000005180 N 0.886
SPEN Gallus gallus ENSGALG00000003662 N 0.886
SPEN Homo sapiens ENSG00000065526 N 0.886
SPEN Pteropus vampyrus ENSPVAG00000013794 N 0.882
SPEN Macaca mulatta ENSMMUG00000008026 N 0.878
XR_024490.1 Pan troglodytes ENSPTRG00000000210 N 0.845
SPEN Tupaia belangeri ENSTBEG00000003628 N 0.830
LOC100053790 Equus caballus ENSECAG00000008833 N 0.823
Ame_R009637 Ailuropoda melanoleuca Ame_R009637 N 0.823
SPEN Anolis carolinensis ENSACAG00000013761 N 0.819
SPEN Loxodonta africana ENSLAFG00000004524 N 0.819
SPEN Ochotona princeps ENSOPRG00000015800 N 0.815
SPEN Monodelphis domestica ENSMODG00000003411 N 0.815
SPEN Tarsius syrichta ENSTSYG00000007170 N 0.808
SPEN Tursiops truncatus ENSTTRG00000015704 N 0.793
spen Danio rerio ENSDARG00000074245 N 0.790
SPEN Erinaceus europaeus ENSEEUG00000010255 N 0.786
SPEN Canis familiaris ENSCAFG00000016132 N 0.779
SPEN Oryctolagus cuniculus ENSOCUG00000010840 N 0.779
SPEN Cavia porcellus ENSCPOG00000014036 N 0.779
SPEN Spermophilus tridecemlineatus ENSSTOG00000005637 N 0.760
SPEN Ornithorhynchus anatinus ENSOANG00000004165 N 0.710
SPEN Myotis lucifugus ENSMLUG00000010144 N 0.705