spen (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000074245 T36222_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000098999 RRM 14 80
ENSDARP00000098999 RRM 344 414
ENSDARP00000098999 RRM 447 514
ENSDARP00000098999 RRM 526 557
ENSDARP00000104013 RRM 43 113
ENSDARP00000104013 RRM 146 213
ENSDARP00000104013 RRM 225 263

Links

Other RRM family RBPs
Other Danio rerio RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SPEN Ornithorhynchus anatinus ENSOANG00000004165 N 0.933
SPEN Taeniopygia guttata ENSTGUG00000002064 N 0.927
SPEN Takifugu rubripes ENSTRUG00000001017 N 0.834
SPEN Tetraodon nigroviridis ENSTNIG00000010907 N 0.830
SPEN Oryzias latipes ENSORLG00000020159 N 0.828
SPEN Gasterosteus aculeatus ENSGACG00000005341 N 0.823
SPEN Macropus eugenii ENSMEUG00000002422 N 0.819
SPEN Callithrix jacchus ENSCJAG00000008527 N 0.819
SPEN Bos taurus ENSBTAG00000018729 N 0.819
LOC690911 Rattus norvegicus ENSRNOG00000033556 N 0.819
Spen Mus musculus ENSMUSG00000040761 N 0.819
SPEN Homo sapiens ENSG00000065526 N 0.819
SPEN Pteropus vampyrus ENSPVAG00000013794 N 0.815
SPEN Meleagris gallopavo ENSMGAG00000005180 N 0.815
SPEN Gallus gallus ENSGALG00000003662 N 0.815
SPEN Gorilla gorilla ENSGGOG00000012041 N 0.815
ENSPPYG00000001834 Pongo pygmaeus ENSPPYG00000001834 N 0.815
SPEN Macaca mulatta ENSMMUG00000008026 N 0.808
SPEN Procavia capensis ENSPCAG00000009543 N 0.799
SPEN Takifugu rubripes ENSTRUG00000011123 N 0.790
SPEN Tetraodon nigroviridis ENSTNIG00000014666 N 0.790
SPEN Gasterosteus aculeatus ENSGACG00000001176 N 0.790
SPEN Oryzias latipes ENSORLG00000018414 N 0.790
SPEN Danio rerio ENSDARG00000074332 N 0.775
XR_024490.1 Pan troglodytes ENSPTRG00000000210 N 0.771
SPEN Tupaia belangeri ENSTBEG00000003628 N 0.756
LOC100053790 Equus caballus ENSECAG00000008833 N 0.745
Ame_R009637 Ailuropoda melanoleuca Ame_R009637 N 0.745
SPEN Loxodonta africana ENSLAFG00000004524 N 0.745
SPEN Anolis carolinensis ENSACAG00000013761 N 0.742
SPEN Monodelphis domestica ENSMODG00000003411 N 0.738
SPEN Tarsius syrichta ENSTSYG00000007170 N 0.734
SPEN Ochotona princeps ENSOPRG00000015800 N 0.734
SPEN Tursiops truncatus ENSTTRG00000015704 N 0.712
SPEN Erinaceus europaeus ENSEEUG00000010255 N 0.705
SPEN Cavia porcellus ENSCPOG00000014036 N 0.701
SPEN Canis familiaris ENSCAFG00000016132 N 0.701