SPEN (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000018414 T40254_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000023046 RRM 8 74
ENSORLP00000023046 RRM 334 404
ENSORLP00000023046 RRM 437 504
ENSORLP00000023046 RRM 516 580

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SPEN Tetraodon nigroviridis ENSTNIG00000014666 N 0.993
SPEN Takifugu rubripes ENSTRUG00000011123 N 0.985
SPEN Gasterosteus aculeatus ENSGACG00000001176 N 0.982
SPEN Danio rerio ENSDARG00000074332 N 0.956
SPEN Takifugu rubripes ENSTRUG00000001017 N 0.893
SPEN Gasterosteus aculeatus ENSGACG00000005341 N 0.893
SPEN Meleagris gallopavo ENSMGAG00000005180 N 0.889
SPEN Tetraodon nigroviridis ENSTNIG00000010907 N 0.889
SPEN Gallus gallus ENSGALG00000003662 N 0.889
SPEN Callithrix jacchus ENSCJAG00000008527 N 0.886
SPEN Bos taurus ENSBTAG00000018729 N 0.886
SPEN Gorilla gorilla ENSGGOG00000012041 N 0.882
SPEN Homo sapiens ENSG00000065526 N 0.882
LOC690911 Rattus norvegicus ENSRNOG00000033556 N 0.882
Spen Mus musculus ENSMUSG00000040761 N 0.882
ENSPPYG00000001834 Pongo pygmaeus ENSPPYG00000001834 N 0.882
SPEN Pteropus vampyrus ENSPVAG00000013794 N 0.878
SPEN Macaca mulatta ENSMMUG00000008026 N 0.875
XR_024490.1 Pan troglodytes ENSPTRG00000000210 N 0.841
SPEN Tupaia belangeri ENSTBEG00000003628 N 0.827
SPEN Anolis carolinensis ENSACAG00000013761 N 0.823
LOC100053790 Equus caballus ENSECAG00000008833 N 0.819
SPEN Monodelphis domestica ENSMODG00000003411 N 0.819
Ame_R009637 Ailuropoda melanoleuca Ame_R009637 N 0.819
SPEN Loxodonta africana ENSLAFG00000004524 N 0.815
SPEN Ochotona princeps ENSOPRG00000015800 N 0.812
SPEN Tarsius syrichta ENSTSYG00000007170 N 0.804
spen Danio rerio ENSDARG00000074245 N 0.790
SPEN Tursiops truncatus ENSTTRG00000015704 N 0.790
SPEN Erinaceus europaeus ENSEEUG00000010255 N 0.782
SPEN Oryctolagus cuniculus ENSOCUG00000010840 N 0.775
SPEN Cavia porcellus ENSCPOG00000014036 N 0.775
SPEN Canis familiaris ENSCAFG00000016132 N 0.775
SPEN Spermophilus tridecemlineatus ENSSTOG00000005637 N 0.756
SPEN Ornithorhynchus anatinus ENSOANG00000004165 N 0.713
SPEN Myotis lucifugus ENSMLUG00000010144 N 0.701