CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SNRPA
(
Microcebus murinus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMICG00000009766
T38538_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
SNRPA
M317_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
661_1717938
0.848
SNRPA
M069_0.6
Homo sapiens
WUGCACR
RNAcompete
Ray et al.(2013)
RNCMPT00071
0.848
SNRPA
M348_0.6
Homo sapiens
AGGAGAU
SELEX
Cook et al.(2011)
949_10094314
0.848
SNRPA
M347_0.6
Homo sapiens
GAGCAGUAGKS
SELEX
Cook et al.(2011)
948_10094314
0.848
SNRPA
M346_0.6
Homo sapiens
GGGUAUGCUG
SELEX
Cook et al.(2011)
947_10094314
0.848
SNRPA
M345_0.6
Homo sapiens
GWUWCCUGCUA
SELEX
Cook et al.(2011)
946_10094314
0.848
SNRPA
M319_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
663_1717938
0.848
SNRPA
M318_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
662_1717938
0.848
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMICP00000008887
RRM
12
83
IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR
ENSMICP00000008887
RRM
229
275
XXFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAM
Links
Other
RRM
family RBPs
Other
Microcebus murinus
RBPs
52 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SNRPA
Oryctolagus cuniculus
ENSOCUG00000024618
I
0.967
SNRPA
Loxodonta africana
ENSLAFG00000026568
I
0.928
SNRPA
Tursiops truncatus
ENSTTRG00000007182
I
0.854
SNRPA
Gorilla gorilla
ENSGGOG00000001190
I
0.848
LOC100068274
Equus caballus
ENSECAG00000013141
I
0.848
SNRPA
Felis catus
ENSFCAG00000016209
I
0.848
SNRPA
Homo sapiens
ENSG00000077312
D
0.848
ENSDORG00000006711
Dipodomys ordii
ENSDORG00000006711
I
0.848
SNRPA
Cavia porcellus
ENSCPOG00000010875
I
0.848
SNRPA_BOVIN
Bos taurus
ENSBTAG00000009077
I
0.848
SNRPA
Canis familiaris
ENSCAFG00000005091
I
0.848
SNRPA
Myotis lucifugus
ENSMLUG00000000219
I
0.848
Ame_R012098
Ailuropoda melanoleuca
Ame_R012098
I
0.848
SNRPA
Tupaia belangeri
ENSTBEG00000012717
I
0.848
SNRPA
Sus scrofa
ENSSSCG00000002998
I
0.848
ENSPPYG00000010002
Pongo pygmaeus
ENSPPYG00000010002
I
0.848
SNRPA
Ochotona princeps
ENSOPRG00000002364
I
0.848
SNRPA
Macaca mulatta
ENSMMUG00000022024
I
0.848
SNRPA
Pan troglodytes
ENSPTRG00000011007
I
0.848
Snrpa
Rattus norvegicus
ENSRNOG00000001501
I
0.848
SNRPA
Pteropus vampyrus
ENSPVAG00000001494
I
0.848
SNRPA
Otolemur garnettii
ENSOGAG00000002864
I
0.848
SNRPA
Monodelphis domestica
ENSMODG00000007912
I
0.841
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.841
SNRPA
Erinaceus europaeus
ENSEEUG00000015149
I
0.841
SNRPA
Anolis carolinensis
ENSACAG00000013557
I
0.826
Snrpa
Mus musculus
ENSMUSG00000061479
I
0.826
LOC100410790
Callithrix jacchus
ENSCJAG00000021962
I
0.826
AAH44979
Xenopus laevis
AAH44979
I
0.804
P45429
Xenopus laevis
P45429
I
0.804
CAA41021
Xenopus laevis
CAA41021
I
0.804
SNRPA
Takifugu rubripes
ENSTRUG00000009703
I
0.797
snrpa
Danio rerio
ENSDARG00000018890
I
0.797
SNRPA
Tetraodon nigroviridis
ENSTNIG00000007732
I
0.790
SNRPA
Gasterosteus aculeatus
ENSGACG00000009838
I
0.790
SNRPA
Echinops telfairi
ENSETEG00000019205
I
0.783
SNRPA
Oryzias latipes
ENSORLG00000006536
I
0.775
SNRPB2
Dasypus novemcinctus
ENSDNOG00000014137
N
0.760
ENSCJAG00000014865
Callithrix jacchus
ENSCJAG00000014865
I
0.754
e_gw1.38.145.1
Lottia gigantea
e_gw1.38.145.1
I
0.746
nasonia_NCBI_hmm682213
Nasonia vitripennis
nasonia_NCBI_hmm682213
I
0.741
SNRPA
Macropus eugenii
ENSMEUG00000002434
I
0.732
estExt_Genewise1Plus.C_1950032
Capitella teleta
estExt_Genewise1Plus.C_1950032
I
0.732
amel4_ncbi_hmm2739
Apis mellifera
amel4_ncbi_hmm2739
I
0.727
estExt_fgenesh2_pg.C_3980007
Branchiostoma floridae
estExt_fgenesh2_pg.C_3980007
I
0.717
BGIBMGA012118
Bombyx mori
BGIBMGA012118
I
0.717
estExt_fgenesh2_pg.C_1420076
Branchiostoma floridae
estExt_fgenesh2_pg.C_1420076
I
0.717
ENSCING00000009501
Ciona intestinalis
ENSCING00000009501
I
0.710
AGAP011637
Anopheles gambiae
AGAP011637
I
0.703
AAEL014167
Aedes aegypti
AAEL014167
I
0.703
AAEL002980
Aedes aegypti
AAEL002980
I
0.703
SPA_estExt_Genewise1Plus.C_890021
Daphnia pulex
SPA_estExt_Genewise1Plus.C_890021
I
0.703