SNRPA (Microcebus murinus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMICG00000009766 T38538_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.848
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.848
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.848
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.848
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.848
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.848
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.848
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.848
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMICP00000008887 RRM 12 83
ENSMICP00000008887 RRM 229 275

Links

Other RRM family RBPs
Other Microcebus murinus RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.967
SNRPA Loxodonta africana ENSLAFG00000026568 I 0.928
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.854
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.848
LOC100068274 Equus caballus ENSECAG00000013141 I 0.848
SNRPA Felis catus ENSFCAG00000016209 I 0.848
SNRPA Homo sapiens ENSG00000077312 D 0.848
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.848
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.848
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.848
SNRPA Canis familiaris ENSCAFG00000005091 I 0.848
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.848
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.848
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.848
SNRPA Sus scrofa ENSSSCG00000002998 I 0.848
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.848
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.848
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.848
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.848
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.848
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.848
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.848
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.841
SNRPA Procavia capensis ENSPCAG00000012325 I 0.841
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.841
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.826
Snrpa Mus musculus ENSMUSG00000061479 I 0.826
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.826
AAH44979 Xenopus laevis AAH44979 I 0.804
P45429 Xenopus laevis P45429 I 0.804
CAA41021 Xenopus laevis CAA41021 I 0.804
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.797
snrpa Danio rerio ENSDARG00000018890 I 0.797
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.790
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.790
SNRPA Echinops telfairi ENSETEG00000019205 I 0.783
SNRPA Oryzias latipes ENSORLG00000006536 I 0.775
SNRPB2 Dasypus novemcinctus ENSDNOG00000014137 N 0.760
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.754
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.746
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.741
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.732
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.732
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.727
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.717
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.717
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.717
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.710
AGAP011637 Anopheles gambiae AGAP011637 I 0.703
AAEL014167 Aedes aegypti AAEL014167 I 0.703
AAEL002980 Aedes aegypti AAEL002980 I 0.703
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.703