CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SNRPA
(
Loxodonta africana
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSLAFG00000026568
T38112_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
SNRPA
M069_0.6
Homo sapiens
WUGCACR
RNAcompete
Ray et al.(2013)
RNCMPT00071
0.870
SNRPA
M348_0.6
Homo sapiens
AGGAGAU
SELEX
Cook et al.(2011)
949_10094314
0.870
SNRPA
M347_0.6
Homo sapiens
GAGCAGUAGKS
SELEX
Cook et al.(2011)
948_10094314
0.870
SNRPA
M346_0.6
Homo sapiens
GGGUAUGCUG
SELEX
Cook et al.(2011)
947_10094314
0.870
SNRPA
M345_0.6
Homo sapiens
GWUWCCUGCUA
SELEX
Cook et al.(2011)
946_10094314
0.870
SNRPA
M319_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
663_1717938
0.870
SNRPA
M318_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
662_1717938
0.870
SNRPA
M317_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
661_1717938
0.870
snf
M136_0.6
Drosophila melanogaster
UWGCAC
RNAcompete
Ray et al.(2013)
RNCMPT00145
0.717
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLAFP00000020120
RRM
17
88
IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR
ENSLAFP00000020120
RRM
225
278
GLYQVLYNVFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQSNAM
ENSLAFP00000024939
RRM
18
89
IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR
ENSLAFP00000024939
RRM
210
262
LLSVLFIWFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQSNAM
Links
Other
RRM
family RBPs
Other
Loxodonta africana
RBPs
68 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SNRPA
Microcebus murinus
ENSMICG00000009766
I
0.928
SNRPA
Oryctolagus cuniculus
ENSOCUG00000024618
I
0.921
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.877
SNRPA
Tursiops truncatus
ENSTTRG00000007182
I
0.876
SNRPA
Tupaia belangeri
ENSTBEG00000012717
I
0.870
Ame_R012098
Ailuropoda melanoleuca
Ame_R012098
I
0.870
Snrpa
Rattus norvegicus
ENSRNOG00000001501
I
0.870
SNRPA
Homo sapiens
ENSG00000077312
D
0.870
SNRPA
Felis catus
ENSFCAG00000016209
I
0.870
SNRPA
Cavia porcellus
ENSCPOG00000010875
I
0.870
ENSDORG00000006711
Dipodomys ordii
ENSDORG00000006711
I
0.870
LOC100068274
Equus caballus
ENSECAG00000013141
I
0.870
SNRPA_BOVIN
Bos taurus
ENSBTAG00000009077
I
0.870
SNRPA
Pteropus vampyrus
ENSPVAG00000001494
I
0.870
SNRPA
Sus scrofa
ENSSSCG00000002998
I
0.870
SNRPA
Myotis lucifugus
ENSMLUG00000000219
I
0.870
SNRPA
Otolemur garnettii
ENSOGAG00000002864
I
0.870
SNRPA
Gorilla gorilla
ENSGGOG00000001190
I
0.870
SNRPA
Pan troglodytes
ENSPTRG00000011007
I
0.870
SNRPA
Macaca mulatta
ENSMMUG00000022024
I
0.870
SNRPA
Ochotona princeps
ENSOPRG00000002364
I
0.870
ENSPPYG00000010002
Pongo pygmaeus
ENSPPYG00000010002
I
0.870
SNRPA
Canis familiaris
ENSCAFG00000005091
I
0.870
SNRPA
Monodelphis domestica
ENSMODG00000007912
I
0.862
SNRPA
Erinaceus europaeus
ENSEEUG00000015149
I
0.862
SNRPA
Anolis carolinensis
ENSACAG00000013557
I
0.848
LOC100410790
Callithrix jacchus
ENSCJAG00000021962
I
0.848
Snrpa
Mus musculus
ENSMUSG00000061479
I
0.848
AAH44979
Xenopus laevis
AAH44979
I
0.841
CAA41021
Xenopus laevis
CAA41021
I
0.841
P45429
Xenopus laevis
P45429
I
0.841
SNRPA
Takifugu rubripes
ENSTRUG00000009703
I
0.833
snrpa
Danio rerio
ENSDARG00000018890
I
0.833
SNRPA
Gasterosteus aculeatus
ENSGACG00000009838
I
0.819
SNRPA
Tetraodon nigroviridis
ENSTNIG00000007732
I
0.819
SNRPA
Echinops telfairi
ENSETEG00000019205
I
0.804
SNRPA
Oryzias latipes
ENSORLG00000006536
I
0.804
e_gw1.38.145.1
Lottia gigantea
e_gw1.38.145.1
I
0.783
nasonia_NCBI_hmm682213
Nasonia vitripennis
nasonia_NCBI_hmm682213
I
0.777
ENSCJAG00000014865
Callithrix jacchus
ENSCJAG00000014865
I
0.775
amel4_ncbi_hmm2739
Apis mellifera
amel4_ncbi_hmm2739
I
0.763
estExt_Genewise1Plus.C_1950032
Capitella teleta
estExt_Genewise1Plus.C_1950032
I
0.761
SNRPA
Macropus eugenii
ENSMEUG00000002434
I
0.754
estExt_fgenesh2_pg.C_1420076
Branchiostoma floridae
estExt_fgenesh2_pg.C_1420076
I
0.746
BGIBMGA012118
Bombyx mori
BGIBMGA012118
I
0.746
estExt_fgenesh2_pg.C_3980007
Branchiostoma floridae
estExt_fgenesh2_pg.C_3980007
I
0.746
ENSCING00000009501
Ciona intestinalis
ENSCING00000009501
I
0.739
SPA_estExt_Genewise1Plus.C_890021
Daphnia pulex
SPA_estExt_Genewise1Plus.C_890021
I
0.732
AAEL002980
Aedes aegypti
AAEL002980
I
0.732
AGAP011637
Anopheles gambiae
AGAP011637
I
0.732
AAEL014167
Aedes aegypti
AAEL014167
I
0.732
e_gw.11.168.1
Nematostella vectensis
e_gw.11.168.1
I
0.725
GH24608
Drosophila grimshawi
FBgn0132064
I
0.725
GK25839
Drosophila willistoni
FBgn0227798
I
0.725
GJ16850
Drosophila virilis
FBgn0204029
I
0.725
snf
Drosophila mojavensis
FBgn0069598
I
0.725
SNRPB2
Dasypus novemcinctus
ENSDNOG00000014137
N
0.722
snf
Drosophila melanogaster
FBgn0003449
D
0.717
GF21334
Drosophila ananassae
FBgn0098336
I
0.717
GA18235-RA
Drosophila pseudoobscura
FBgn0078242
I
0.717
GG18748
Drosophila erecta
FBgn0110957
I
0.717
GL14287
Drosophila persimilis
FBgn0151892
I
0.717
CpipJ_CPIJ019134
Culex pipiens
CpipJ_CPIJ019134
I
0.717
CPIJ019134
Culex quinquefasciatus
CPIJ019134
I
0.717
GE16390
Drosophila yakuba
FBgn0233919
I
0.717
GM12396
Drosophila sechellia
FBgn0167333
I
0.717
Gm5145
Mus musculus
ENSMUSG00000071273
I
0.703