SNRPA (Loxodonta africana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSLAFG00000026568 T38112_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.870
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.870
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.870
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.870
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.870
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.870
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.870
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.870
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.717
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000020120 RRM 17 88
ENSLAFP00000020120 RRM 225 278
ENSLAFP00000024939 RRM 18 89
ENSLAFP00000024939 RRM 210 262

Links

Other RRM family RBPs
Other Loxodonta africana RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SNRPA Microcebus murinus ENSMICG00000009766 I 0.928
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.921
SNRPA Procavia capensis ENSPCAG00000012325 I 0.877
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.876
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.870
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.870
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.870
SNRPA Homo sapiens ENSG00000077312 D 0.870
SNRPA Felis catus ENSFCAG00000016209 I 0.870
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.870
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.870
LOC100068274 Equus caballus ENSECAG00000013141 I 0.870
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.870
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.870
SNRPA Sus scrofa ENSSSCG00000002998 I 0.870
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.870
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.870
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.870
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.870
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.870
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.870
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.870
SNRPA Canis familiaris ENSCAFG00000005091 I 0.870
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.862
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.862
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.848
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.848
Snrpa Mus musculus ENSMUSG00000061479 I 0.848
AAH44979 Xenopus laevis AAH44979 I 0.841
CAA41021 Xenopus laevis CAA41021 I 0.841
P45429 Xenopus laevis P45429 I 0.841
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.833
snrpa Danio rerio ENSDARG00000018890 I 0.833
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.819
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.819
SNRPA Echinops telfairi ENSETEG00000019205 I 0.804
SNRPA Oryzias latipes ENSORLG00000006536 I 0.804
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.783
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.777
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.775
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.763
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.761
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.754
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.746
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.746
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.746
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.739
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.732
AAEL002980 Aedes aegypti AAEL002980 I 0.732
AGAP011637 Anopheles gambiae AGAP011637 I 0.732
AAEL014167 Aedes aegypti AAEL014167 I 0.732
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.725
GH24608 Drosophila grimshawi FBgn0132064 I 0.725
GK25839 Drosophila willistoni FBgn0227798 I 0.725
GJ16850 Drosophila virilis FBgn0204029 I 0.725
snf Drosophila mojavensis FBgn0069598 I 0.725
SNRPB2 Dasypus novemcinctus ENSDNOG00000014137 N 0.722
snf Drosophila melanogaster FBgn0003449 D 0.717
GF21334 Drosophila ananassae FBgn0098336 I 0.717
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.717
GG18748 Drosophila erecta FBgn0110957 I 0.717
GL14287 Drosophila persimilis FBgn0151892 I 0.717
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.717
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.717
GE16390 Drosophila yakuba FBgn0233919 I 0.717
GM12396 Drosophila sechellia FBgn0167333 I 0.717
Gm5145 Mus musculus ENSMUSG00000071273 I 0.703