SNRPA (Macropus eugenii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMEUG00000002434 T38165_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.884
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.884
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.884
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.884
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.884
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.884
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.884
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.884
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.732
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMEUP00000002220 RRM 2 58
ENSMEUP00000002220 RRM 184 249

Links

Other RRM family RBPs
Other Macropus eugenii RBPs

102 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.976
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.884
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.884
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.884
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.884
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.884
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.884
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.884
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.884
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.884
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.884
SNRPA Canis familiaris ENSCAFG00000005091 I 0.884
LOC100068274 Equus caballus ENSECAG00000013141 I 0.884
SNRPA Sus scrofa ENSSSCG00000002998 I 0.884
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.884
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.884
SNRPA Homo sapiens ENSG00000077312 D 0.884
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.884
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.884
SNRPA Felis catus ENSFCAG00000016209 I 0.884
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.884
SNRPA Procavia capensis ENSPCAG00000012325 I 0.877
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.870
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.870
Snrpa Mus musculus ENSMUSG00000061479 I 0.862
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.862
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.862
AAH44979 Xenopus laevis AAH44979 I 0.848
P45429 Xenopus laevis P45429 I 0.848
CAA41021 Xenopus laevis CAA41021 I 0.848
snrpa Danio rerio ENSDARG00000018890 I 0.841
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.833
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.833
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.826
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.826
SNRPA Oryzias latipes ENSORLG00000006536 I 0.819
SNRPA Echinops telfairi ENSETEG00000019205 I 0.812
XP_789234.2 Strongylocentrotus purpuratus XP_789234.2 I 0.798
XP_001202981.1 Strongylocentrotus purpuratus XP_001202981.1 I 0.798
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.790
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.780
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.775
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.763
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.761
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.761
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.761
AGAP011637 Anopheles gambiae AGAP011637 I 0.754
SNRPA Loxodonta africana ENSLAFG00000026568 I 0.754
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.748
AAEL002980 Aedes aegypti AAEL002980 I 0.746
AAEL014167 Aedes aegypti AAEL014167 I 0.746
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.746
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.739
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.739
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.739
GK25839 Drosophila willistoni FBgn0227798 I 0.739
GH24608 Drosophila grimshawi FBgn0132064 I 0.739
GJ16850 Drosophila virilis FBgn0204029 I 0.739
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.739
snf Drosophila mojavensis FBgn0069598 I 0.739
SNRPA Microcebus murinus ENSMICG00000009766 I 0.732
GF21334 Drosophila ananassae FBgn0098336 I 0.732
snf Drosophila melanogaster FBgn0003449 D 0.732
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.732
GE16390 Drosophila yakuba FBgn0233919 I 0.732
GL14287 Drosophila persimilis FBgn0151892 I 0.732
GG18748 Drosophila erecta FBgn0110957 I 0.732
GM12396 Drosophila sechellia FBgn0167333 I 0.732
AAH84107 Xenopus laevis AAH84107 I 0.725
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.725
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.719
Gm5145 Mus musculus ENSMUSG00000071273 I 0.717
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.712
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.712
AAH72799 Xenopus laevis AAH72799 I 0.712
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.712
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.705
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.705
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.705
LOC100050830 Equus caballus ENSECAG00000018407 I 0.705
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.705
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.705
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.705
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.705
SNRPB2 Homo sapiens ENSG00000125870 I 0.705
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.705
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.705
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.705
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.705
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.705
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.705
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.705
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.705
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.705
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.705
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.705
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.705
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.705
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.705
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.705
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.705
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.705